Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021184
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42870.1 68416.m04493 hypothetical protein 33 0.24
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica... 30 1.3
At2g27210.1 68415.m03270 kelch repeat-containing serine/threonin... 30 1.7
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin... 30 1.7
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 29 2.3
At1g44350.1 68414.m05110 IAA-amino acid hydrolase 6, putative (I... 29 3.0
At3g04790.1 68416.m00516 ribose 5-phosphate isomerase-related si... 29 4.0
At3g31900.1 68416.m04029 hypothetical protein 28 5.2
At1g60660.1 68414.m06829 cytochrome b5 domain-containing protein... 28 5.2
At1g12090.1 68414.m01399 protease inhibitor/seed storage/lipid t... 28 5.2
At5g52520.1 68418.m06516 tRNA synthetase class II (G, H, P and S... 28 6.9
At5g48060.1 68418.m05938 C2 domain-containing protein contains I... 28 6.9
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot... 28 6.9
At5g67550.1 68418.m08518 expressed protein 27 9.2
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 27 9.2
At2g27460.1 68415.m03319 sec23/sec24 transport family protein we... 27 9.2
At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family... 27 9.2
At2g14820.1 68415.m01679 phototropic-responsive NPH3 family prot... 27 9.2
>At3g42870.1 68416.m04493 hypothetical protein
Length = 312
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = -1
Query: 190 GSGESAGHILRDGAVPPDDPHRERPLSSEQQRRVSRGECGRPHGSTVQGHTAHHPKV--Q 17
GSG S GHI ++ PP+ PH PL + Q R++ G+ + GS G T P + Q
Sbjct: 208 GSGHSFGHI-QEWGTPPNAPHWGTPLIAPQWRQIF-GKF-QQVGSQGDGATMETPPIIQQ 264
Query: 16 SPSTG 2
+ S+G
Sbjct: 265 TSSSG 269
>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 662
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 469 PRGPAQGERRVRRDADPTMPPARAPGPRGCDGGWLKFGQVPSAIAL 332
P Q +R +R P +P + A GP G DG W PS++ L
Sbjct: 361 PSSQPQPPQRNKRPRPPGLP-SPATGPSGPDGVWKSPADTPSSVPL 405
>At2g27210.1 68415.m03270 kelch repeat-containing serine/threonine
phosphoesterase family protein similar to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile
PF00149: Calcineurin-like phosphoesterase
Length = 1006
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 362 VWPSSFSNRSLHLAYAT*RAARFHRPTADGPGDRPR 255
+ P+ S LH+ T + R+HR GPG PR
Sbjct: 195 IGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 230
>At1g08420.1 68414.m00931 kelch repeat-containing protein /
serine/threonine phosphoesterase family protein contains
Pfam profiles: PF00149 calcineurin-like phosphoesterase,
PF01344 kelch motif
Length = 1018
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 362 VWPSSFSNRSLHLAYAT*RAARFHRPTADGPGDRPR 255
+ P+ S LH+ T + R+HR GPG PR
Sbjct: 206 IGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 241
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 364 SATRRRTL-EALVPVLEAWSDRRHGVLSFHLAQVLSGHGCFGRY 492
+ T ++TL ++ +P+L +++D G+++ + HGCF R+
Sbjct: 480 TVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRF 523
>At1g44350.1 68414.m05110 IAA-amino acid hydrolase 6, putative
(ILL6) / IAA-Ala hydrolase, putative virtually identical
to gr1-protein from [Arabidopsis thaliana] GI:3559811;
similar to IAA-amino acid hydrolase GI:3421384 from
[Arabidopsis thaliana]; contains TIGRfam profile
TIGR01891: amidohydrolase; contains Pfam profile
PF01546: Peptidase family M20/M25/M40; identical to
cDNA IAA-amino acid conjugate hydrolase-like protein
(ILL6), partial cds GI:17978837
Length = 464
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 537 TGGSPDVALSADLPQVPPETAMSREDLRKVKGE 439
+GG P VA+ AD+ +P + A+ E + KV G+
Sbjct: 139 SGGPPFVAVRADMDALPIQEAVEWEHISKVAGK 171
>At3g04790.1 68416.m00516 ribose 5-phosphate isomerase-related
similar to ribose-5-phosphate isomerase GI:18654317 from
[Spinacia oleracea]
Length = 276
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 537 TGGSPDVALSADLPQVPPETAMSREDLRKVKGEYAVTPIRP 415
TG SP ++S + A+S++DL+K+ E AV I+P
Sbjct: 24 TGSSPRTSVSFSVKA--QSVALSQDDLKKLAAEKAVEAIKP 62
>At3g31900.1 68416.m04029 hypothetical protein
Length = 393
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 613 DEISPRVLPTRARFERVCASSSGCPH-W-WQPGCGSLCRPSTGTS 485
+ I P+ P FE+ A+ + C H W W+ G G +C G+S
Sbjct: 132 EAIWPKDEPISNTFEKSRATLTNCEHSWIWKQGFGDMCYHLQGSS 176
>At1g60660.1 68414.m06829 cytochrome b5 domain-containing protein
contains InterPro accession IPR001199: Cytochrome b5
Length = 121
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 670 IL*HAGDDSPQGEVSPQHRDEI 605
IL HAGDDS G PQH +
Sbjct: 87 ILDHAGDDSTDGFFGPQHATRV 108
>At1g12090.1 68414.m01399 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to 14 kDa
polypeptide [Catharanthus roseus] GI:407410; contains
Pfam protease inhibitor/seed storage/LTP family domain
PF00234
Length = 137
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 150 APSLKMWPALSPDPYPGTSR-PKSWLRYIGVRRRP*SGTVARPVGCRSVEACCA 308
+P K P +P P G+S+ PK L+ +GV +G + +G VE CC+
Sbjct: 35 SPKPKPTPKPTPSPSSGSSKCPKDTLK-LGVCANVLNGLLDLTLGKPPVEPCCS 87
>At5g52520.1 68418.m06516 tRNA synthetase class II (G, H, P and S)
family protein similar to SP|P07814 Bifunctional
aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
ligase)] {Homo sapiens}; contains Pfam profiles PF00587:
tRNA synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain
Length = 543
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 156 SLKMWPALSPDPYPGTSR-PKSWLRYIGVRRRP*SGTVARPVGCRSVE 296
SL++ P+L+ +P T+R P + R + +R RP SG P G S E
Sbjct: 5 SLRL-PSLTSLLFPATTRYPATLRRTVCLRNRPLSGFATAPSGTASPE 51
>At5g48060.1 68418.m05938 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1036
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 373 RRRTLEALVPV-LEAWSDRRHGVLSFHLAQVLSGHGCFGRYLWKVC 507
R+ +E ++ V WS RR F + +LSG+ G++L VC
Sbjct: 810 RKEVVEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVC 855
>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
/ BED zinc finger domain-containing protein /
transposase-related weak similarity to Tam3-transposase
[Antirrhinum majus] GI:16064; contains Pfam profiles
PF02892: BED zinc finger, PF05699: hAT family
dimerisation domain
Length = 676
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Frame = -2
Query: 624 PSTATRSRRECSQRGHVSSACA---RHRPGARTG---GSPDVALSADLPQVPPETAMSRE 463
P + TR + C Q +++A RH G + DV S+ +PQ PP +
Sbjct: 51 PDSKTRKCKFCGQSYSIATATGNLGRHLTNRHPGYDKAAADVVTSSSVPQTPPAVVKPSQ 110
Query: 462 DLRKV 448
KV
Sbjct: 111 SQSKV 115
>At5g67550.1 68418.m08518 expressed protein
Length = 439
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 532 WQPGCGSLCRPSTGTSRNSHVPRGPAQG 449
W P G +C P G NS+ P+ + G
Sbjct: 276 WAPESGIICDPFVGQQINSYTPQSCSNG 303
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 686 PPTSPDPLTCGRRQPAGRGFSPAPRRDLAASAPNAGT 576
PP+S P T + A SPAP A +P GT
Sbjct: 1172 PPSSEAPQTESAPETAAAAESPAPETAAVAESPAPGT 1208
>At2g27460.1 68415.m03319 sec23/sec24 transport family protein weak
similarity to SP|P53992 Protein transport protein Sec24C
(SEC24-related protein C) {Homo sapiens}; contains Pfam
domains PF04811: Sec23/Sec24 trunk domain, PF04815:
Sec23/Sec24 helical domain and PF04810: Sec23/Sec24 zinc
finger
Length = 745
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 501 LPQVPPETAMSREDLRKVKGEYAVTP 424
+P PP+ + R+ + KVK E ++TP
Sbjct: 668 IPFPPPQDCLLRQTINKVKQERSITP 693
>At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family
protein identical to cDNA nematode responsive protein
GI:2213418
Length = 695
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 450 PCAGPLGTWLFREV-PVEGLQREPHPGCHQCGH 545
P +G WL + P EGL +PHPG GH
Sbjct: 463 PPSGNHQQWLIPVMSPSEGLIYKPHPGMAHTGH 495
>At2g14820.1 68415.m01679 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 634
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 61 RVVARTLREKRVSAAQSSAGARGEGHQGVPHHLSRCGL--RSRRIPTL 198
RVV + L ++V AA SS + + +G+ L CG SR +PT+
Sbjct: 476 RVVVQVLFFEQVRAAASSGSSTPDLPRGMGRELRSCGTYGSSRSVPTV 523
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,207,951
Number of Sequences: 28952
Number of extensions: 434353
Number of successful extensions: 1478
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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