Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021183
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 353  DACDRPRLPESKAELDSL 406
            D  DRP L E++ ++DSL
Sbjct: 1877 DRSDRPELSEAECDIDSL 1894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 353  DACDRPRLPESKAELDSL 406
            D  DRP L E++ ++DSL
Sbjct: 1873 DRSDRPELSEAECDIDSL 1890


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 688 CIFTKTDTLFYNFIHEKYIP 747
           C+F  TD + Y+ +   YIP
Sbjct: 336 CLFYNTDFIIYSSLSSFYIP 355


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 465 NPVLPVKTNYVTFSIVSAD 521
           NP +   TNY  FS+  +D
Sbjct: 68  NPAMQTATNYYLFSLAISD 86


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +2

Query: 242 TVNRRMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDET 421
           T+    R T  D  GH     +        D +V +V A D  +  E   +   +  D  
Sbjct: 188 TLESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVK--EQTLQSIEMAKD-- 243

Query: 422 LSNCPVLILGNKIDKP 469
            +  P+++  NKIDKP
Sbjct: 244 -AKVPIIVAINKIDKP 258


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 147 PETRACLTFSIDQEI 103
           P  R C+ F  DQE+
Sbjct: 340 PRARGCIIFGSDQEV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,915
Number of Sequences: 438
Number of extensions: 4407
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)