Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021182X
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    41   9e-05
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   1.6  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    27   2.1  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.9  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   6.5  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    25   6.5  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   8.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   8.6  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   8.6  

>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +1

Query: 247 VKFDDVLAEKLYKXPTEHLPIXXXXXXXXXXXXXXPRPEGEE-KVEDIQVLLSSDAHSSN 423
           + +++ LA  L   PT+ LP+                 E     +   QV L  DA+   
Sbjct: 72  ISYNEDLAHLLLSQPTDILPLFESAVTTVAKRLLYRSQENASTNIPTCQVTLRYDANILP 131

Query: 424 LRELKSETVSRLVKIPGIVISASGIKAK 507
           +R L +  +S+LV++PGI+I AS +  +
Sbjct: 132 IRNLTASHISKLVRVPGIIIGASTLSCR 159


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 385 YPQLSPHLLVSVQSTH 338
           YPQ+ PHLL  +++TH
Sbjct: 260 YPQIKPHLLSCLKNTH 275


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 415 SSNLRELKSETVSRLVKIPGIVISASGIK 501
           +++LRE+K +   RLV  PGIV  +S  K
Sbjct: 310 TTSLREVKLDNKLRLVDSPGIVFPSSDSK 338


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 65  DNFGVEENESQDHVNLQAVKKKFKE 139
           ++ GV+ N  + H+ +Q +KK  +E
Sbjct: 757 EDLGVQINVEEGHIRIQGIKKNVEE 781


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 361  EGEEKVEDIQVLLSSDAHSSNLRELKSETVS 453
            EG++ VE++    +SDA  S+  E +SE  S
Sbjct: 939  EGDDSVEEVSEYEASDADPSDEEEEESEEYS 969


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 59  FSDNFGVEENES-QDHVNLQAVKKKFKEFMRQFHTG 163
           +SD F     +S  DH N + V+     F++QFH G
Sbjct: 270 YSDFFDQNSQKSLDDHFNEKEVELNKLAFLQQFHYG 305


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 350 HRDQKVRRKLRIFKC 394
           HRD K+  K+ IFKC
Sbjct: 652 HRDWKIYSKIPIFKC 666


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 116 AVKKKFKEFMRQFHTGNFNYKYRDALKRNYNLNQYWVEINIEDLSS 253
           + KK F E + +FH      +  +   RN    +  VE  +EDL+S
Sbjct: 71  SAKKSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTS 116


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 367 EEKVEDIQVLLSSDAHSSNLRE 432
           EE V D+Q  +  DA  +NLR+
Sbjct: 312 EEAVRDVQSAIELDASDANLRQ 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,928
Number of Sequences: 5004
Number of extensions: 33778
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)