Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021182X
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555...    47   8e-06
09_04_0398 + 17278163-17278480                                         31   0.70 
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092...    29   2.8  
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888...    28   5.0  
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319...    27   8.7  

>02_05_1080 -
           33955034-33955117,33955199-33955300,33955381-33955510,
           33955674-33955783,33955827-33955950,33956042-33956136,
           33956205-33956300,33956419-33956551,33956668-33956759,
           33956844-33956948,33957201-33957335,33957421-33957526,
           33957621-33957748,33957860-33957958,33958049-33958228,
           33958303-33958446,33958533-33958647,33958739-33958905
          Length = 714

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
 Frame = +1

Query: 253 FDDVLAEKLYKXPTEHLPIXXXXXXXXXXXXXXP----RPEGEEKVE-DIQVLLSSDAHS 417
           FD  L++K+ K P ++LP+                     E EE    D+Q+ LSS  + 
Sbjct: 76  FDAELSDKIRKSPADYLPLFETAASEVLASLRSKVAGETGEMEEPATGDVQIFLSSKENC 135

Query: 418 SNLRELKSETVSRLVKIPGIVISASGIKAK 507
            ++R + ++ +S+LVKI GI I+AS +KAK
Sbjct: 136 LSMRSIGADYMSKLVKIAGITIAASRVKAK 165



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +2

Query: 29  MEGFDDPGVFFSDNF----GVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALK 196
           M G+D+  VF+SD      G    +    +   +  +KFKEF+R F     ++ YR++L 
Sbjct: 1   MSGWDEGAVFYSDQAQFPRGGPGGDPSADLTRHSALRKFKEFLRGFTGPTGDFPYRESLV 60

Query: 197 RNYNLNQYWVEINIEDLSS 253
            N +     V + IEDL +
Sbjct: 61  HNRD----HVTVAIEDLDA 75


>09_04_0398 + 17278163-17278480
          Length = 105

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 107 NLQAVKKKFKEFMRQFHTGNFNYKYRDALKR 199
           N  AV++KFKE++RQF T       RD L+R
Sbjct: 23  NETAVREKFKEWIRQFDTDGDGRISRDELRR 53


>01_03_0010 -
           11608537-11608786,11608816-11608940,11609152-11609217,
           11609741-11609872,11610507-11610608,11610743-11610940,
           11611015-11611161,11611321-11611431,11613241-11613780,
           11613847-11614003,11614148-11614297,11614375-11614514,
           11615346-11615468,11615561-11615677,11617184-11617357,
           11617768-11617909,11618076-11618194,11619773-11619955
          Length = 991

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 496 YRMLILQYQESSLVLIQFLI*APSNLMNVHLMTKALEYP 380
           +++ IL Y+E SL L    + +   L+N+H   K L YP
Sbjct: 285 FKIYILLYKEVSLALKINSMYSKQRLLNIHENVKVLRYP 323


>12_02_0768 -
           22988119-22988223,22988337-22988558,22988645-22988810,
           22989176-22989181,22989281-22989453,22989737-22989928,
           22990034-22990211,22990302-22990444,22990666-22990755,
           22990869-22990991,22991391-22991568,22992213-22992442,
           22992557-22992616,22992731-22992798,22992908-22992953
          Length = 659

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 424 LRELKSETVSRLVKIPGIVISASGIK 501
           +R++K+  + +LVKI GIV   S +K
Sbjct: 150 IRQVKASNIGQLVKISGIVTRCSDVK 175


>08_02_0800 +
           21330446-21330722,21331040-21331182,21331925-21331978,
           21332065-21332130,21333075-21333096,21333347-21333460,
           21334153-21334278,21334891-21334925,21335709-21335809,
           21335911-21335971,21336482-21336572,21337657-21337842,
           21338755-21338922,21339006-21339208,21339313-21339431,
           21339910-21339928,21340092-21340130,21340238-21340465,
           21340987-21341088,21341842-21341889,21343622-21343765,
           21343873-21343968,21344224-21344325,21345188-21345274
          Length = 876

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 84  SSTPKLSEKNTPGSSKPSMLLNHNL 10
           SST +L   N PGSS P  L+ H L
Sbjct: 426 SSTWELRRLNPPGSSTPKCLVTHML 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,778,927
Number of Sequences: 37544
Number of extensions: 177148
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)