Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021182X
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   4e-19
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       29   2.2  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         29   2.9  
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            28   5.1  
SB_24377| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_54392| Best HMM Match : G6PD_N (HMM E-Value=1.3)                    27   6.7  
SB_41185| Best HMM Match : RVT_1 (HMM E-Value=1.7e-10)                 27   6.7  
SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)         27   6.7  
SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4)                  27   8.9  

>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 38/75 (50%), Positives = 54/75 (72%)
 Frame = +2

Query: 29  MEGFDDPGVFFSDNFGVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALKRNYN 208
           M GFD   +F SD FG E+   +  +N  + KK+FKEF+R+FH G F + YRD LK++YN
Sbjct: 1   MSGFDQGEIFVSDPFGSEDQSDERDLNRVSAKKRFKEFLREFHEGTFAFPYRDQLKQHYN 60

Query: 209 LNQYWVEINIEDLSS 253
           L QY++E+++EDLSS
Sbjct: 61  LGQYYLEVDLEDLSS 75



 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 41/85 (48%), Positives = 58/85 (68%)
 Frame = +1

Query: 253 FDDVLAEKLYKXPTEHLPIXXXXXXXXXXXXXXPRPEGEEKVEDIQVLLSSDAHSSNLRE 432
           FD+ LA+KL K P+E+LP+              PRP GEE+V+D+Q+ L S A+   +RE
Sbjct: 76  FDENLADKLRKNPSEYLPLFETAAKEVADEVTRPRPIGEEEVQDVQITLRSGANPFQIRE 135

Query: 433 LKSETVSRLVKIPGIVISASGIKAK 507
           L+SE ++ LVKIPGI+ISAS I++K
Sbjct: 136 LRSEHMAALVKIPGIIISASSIRSK 160


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 32  EGFDDPGVFFSDNFGVEENESQDHVNLQAVKKKFKEFMRQF 154
           EGF  P  + SD+ G+EE+E   H +   + K  ++F R+F
Sbjct: 16  EGFFVPHGYLSDDEGIEEDEEFVHSSSMGINKLIRQF-REF 55


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +3

Query: 39  LMILVYFSLIILV*KKTNLKIMLIYKQSKRNSKNS*DSFILETSITNTEMPSNATI 206
           L ++ + ++  LV +  N+K    Y Q +R S++S DSF + T + +T++  N  +
Sbjct: 489 LAVITFINMPSLVSEVGNMK----YSQMERLSRSSKDSFSVRTLVCSTKLTQNVDL 540


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 95   EIRFLLHQNYQRKIHQDHQNL 33
            E R  L Q YQRK+H++ QN+
Sbjct: 1155 EFRESLEQEYQRKLHKEKQNI 1175


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 32  EGFDDPGVFFSDNFGVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDAL 193
           E FDD  +   DN  V  + S+D  N + V+KK K  +     G F  + RD L
Sbjct: 124 ERFDDLFLRAFDNLEVRVDLSED--NCELVRKKLKAVINTCLNGKFPKQQRDNL 175


>SB_24377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +2

Query: 62  SDNFGVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALKR--NYNLNQY-WVEI 232
           S +  VEE+ES   +  +A K+K +      +   +N K ++ L R  N++ N Y  V+I
Sbjct: 70  SHDQNVEEDESGIIIETRAQKRKRENDQVFENQAGYNRKMKETLPRKLNFHENDYVSVKI 129

Query: 233 NIEDLSSL 256
           N+ D   L
Sbjct: 130 NVVDKGPL 137


>SB_54392| Best HMM Match : G6PD_N (HMM E-Value=1.3)
          Length = 277

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 62  SDNFGVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALKR--NYNLNQY-WVEI 232
           S N  VEE+ES   +  +A K+K +      +  ++N K ++   R  N+  N Y  V+I
Sbjct: 159 SHNQNVEEDESGIIIETRAQKRKRENDQVFENQASYNRKMKETRPRKLNFQENDYVSVKI 218

Query: 233 NIEDLSSL 256
           N+ D   L
Sbjct: 219 NVVDKGPL 226


>SB_41185| Best HMM Match : RVT_1 (HMM E-Value=1.7e-10)
          Length = 1118

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 79  RRKRISRSC*FTSSQKEIQRIHETVSY 159
           RR R+S +C   + ++ +QR+ ETV+Y
Sbjct: 564 RRSRLSLTCHHQTDKEGVQRLIETVNY 590


>SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)
          Length = 594

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 39  LMILVYFSLIILV*KKTNLKIMLIYKQSKRNSKNS*DSFILETSITN 179
           L IL+Y  +++       L I++IYK + R  + + + FIL  + ++
Sbjct: 373 LTILLYTIVLVFAIAGNGLLILIIYKNANRRMRTASNLFILNMAASD 419


>SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4)
          Length = 173

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 62  SDNFGVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALKR--NYNLNQY-WVEI 232
           S N  VEE+ES   +  +A K+K +      +  ++N K ++   R  N+  N Y  V+I
Sbjct: 73  SHNQNVEEDESGIIIETRAQKRKRENDQVFENQASYNRKMKETRPRKLNFQENDYVSVKI 132

Query: 233 NIED 244
           N+ D
Sbjct: 133 NVVD 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,066
Number of Sequences: 59808
Number of extensions: 217582
Number of successful extensions: 546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)