Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021182X
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    70   1e-12
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    35   0.029
AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm (li...    29   2.6  
AL110479-5|CAB60314.2|  397|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z93391-9|CAB07683.2|  392|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z81498-4|CAL63995.1|  392|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/85 (40%), Positives = 54/85 (63%)
 Frame = +1

Query: 253 FDDVLAEKLYKXPTEHLPIXXXXXXXXXXXXXXPRPEGEEKVEDIQVLLSSDAHSSNLRE 432
           FD+ +  KL K P + LP               PRP+GEEK+ DIQV L+ D + ++LR+
Sbjct: 80  FDEDIEMKLRKFPGKVLPALEEAAKIVADEITTPRPKGEEKLHDIQVTLTLDEYPTSLRQ 139

Query: 433 LKSETVSRLVKIPGIVISASGIKAK 507
           +KS  VS++VKI GI+++A+ +++K
Sbjct: 140 VKSAQVSQVVKISGIIVAAAQVRSK 164



 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
 Frame = +2

Query: 29  MEGFDDPGVFFSDNF----GVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALK 196
           M   D+PG+++ + F    GV +   +     + +  +F+ F+R F TG F   YRD LK
Sbjct: 1   MSNLDNPGIYYQERFFANDGVPDTGRELIAEYRQLITQFRNFIRDFSTGGFGMIYRDQLK 60

Query: 197 RNYNLNQYWVEINIEDLSS 253
           RNY  ++Y +EIN+  L +
Sbjct: 61  RNYFSHEYRLEINLNHLKN 79


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +2

Query: 95  QDHVNLQAVKK----KFKEFMRQFH-TGNFNYKYRDALKRNYNLNQYWVEINIEDLS 250
           +DHV+ +AV K    +FK F+R FH  GN   KY   +K     N+  +E++  DLS
Sbjct: 156 RDHVSDEAVAKEIERRFKNFLRSFHEPGNKQTKYIQMIKSMAADNRESLEVSFTDLS 212


>AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 7 protein.
          Length = 730

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +1

Query: 376 VEDIQVLLSSD--AHSSNLRELKSETVSRLVKIPGIVISASGIK 501
           ++  +V  ++D  AH + +R +K+  +  LV + G+VI A+ +K
Sbjct: 144 LQRFEVYFTTDDAAHETCVRNIKATEIGHLVSMKGVVIRATEVK 187


>AL110479-5|CAB60314.2|  397|Caenorhabditis elegans Hypothetical
           protein Y105C5B.7 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 103 MILRFVFFYTKIIREKYTRIIKTFHVTKS 17
           MILRF+F +     E Y  I++  H++ S
Sbjct: 1   MILRFLFIFALFFHESYGNIVEQVHLSLS 29


>AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical
           protein F47G6.3 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 122 KKKFKEFMRQFHTGNFNY 175
           KK+F+E ++QF TG F Y
Sbjct: 182 KKQFEEELKQFETGEFTY 199


>Z93391-9|CAB07683.2|  392|Caenorhabditis elegans Hypothetical
           protein W04G5.7 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 68  NFGVEENESQDHVNLQAVKKKFK-EFMRQFHTGNFNYKYRDALK 196
           N GV ++++ D V+ QAV+ KF+ + + + +  N+N+ Y D  K
Sbjct: 292 NVGVFQSKTYDCVS-QAVRNKFQHDALARVNEVNWNWSYADVTK 334


>Z81498-4|CAL63995.1|  392|Caenorhabditis elegans Hypothetical
           protein W04G5.7 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 68  NFGVEENESQDHVNLQAVKKKFK-EFMRQFHTGNFNYKYRDALK 196
           N GV ++++ D V+ QAV+ KF+ + + + +  N+N+ Y D  K
Sbjct: 292 NVGVFQSKTYDCVS-QAVRNKFQHDALARVNEVNWNWSYADVTK 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,139,202
Number of Sequences: 27780
Number of extensions: 185315
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)