Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021182X
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07690.1 68415.m00993 minichromosome maintenance family prote...    42   2e-04
At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati...    30   1.0  
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil...    29   1.8  
At3g03800.1 68416.m00390 syntaxin, putative (SYP131) similar to ...    28   3.1  
At2g12935.1 68415.m01417 hypothetical protein                          28   3.1  
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    28   4.2  
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    27   5.5  
At1g55800.1 68414.m06390 hypothetical protein                          27   7.3  
At5g44635.1 68418.m05469 minichromosome maintenance family prote...    27   9.6  
At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing...    27   9.6  

>At2g07690.1 68415.m00993 minichromosome maintenance family protein
           / MCM family protein similar to SP|P55862 DNA
           replication licensing factor MCM5 (CDC46 homolog)
           {Xenopus laevis}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 727

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = +1

Query: 247 VKFDDVLAEKLYKXPTEHLPIXXXXXXXXXXXXXXPRP-EG----EEKVEDIQVLLSSDA 411
           + FD  L   +   P ++LP+                  EG    E    D+Q+LL+S  
Sbjct: 70  LSFDSDLPSLIRSAPADYLPVFEKAAGEVLTGLKMREANEGGVMEEPLTRDVQILLTSRE 129

Query: 412 HSSNLRELKSETVSRLVKIPGIVISASGIKAK 507
              ++R L ++ +S+LVKI GI I+AS +KAK
Sbjct: 130 DPVSMRLLGAQYISKLVKISGISIAASRVKAK 161



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +2

Query: 29  MEGFDDPGVFFSDNFGVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALKRN 202
           M G+D+  V++SD     E      ++  AV  KFKEF+R F      + YR+AL  N
Sbjct: 1   MSGWDEGAVYYSDQPQFPEAGDAATISPHAVLTKFKEFIRNFEIEQNCFPYREALLDN 58


>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
           licensing factor Mcm7 (MCM7) identical to DNA
           replication licensing factor Mcm7 SP|P43299 PROLIFERA
           protein {Arabidopsis thaliana}; contains Pfam profile
           PF00493: MCM2/3/5 family
          Length = 716

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 358 PEGEEKVEDIQVLLSSDAHSSNLRELKSETVSRLVKIPGIVISASGIK 501
           P   ++  ++     S    S +RE+K+  + +LV+I GIV   S +K
Sbjct: 121 PSEIKRYYEVYFKAPSKGRPSTIREVKASHIGQLVRISGIVTRCSDVK 168


>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
           to malonyl CoA synthetase GB:AAF28840 from
           [Bradyrhizobium japonicum]; contains Pfam AMP-binding
           enzyme domain PF00501; identical to cDNA acyl-activating
           enzyme 13 (At3g16170) GI:29893232, acyl-activating
           enzyme 13 [Arabidopsis thaliana] GI:29893233
          Length = 544

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 382 DIQVLLSSDAHSSNLRELKSETVSRLVKIPGIVISAS 492
           DI +LLS++ HS  ++ + +++ +R   IP +V S S
Sbjct: 113 DISLLLSTEDHSETMKTIAAKSGARFHLIPPVVNSTS 149


>At3g03800.1 68416.m00390 syntaxin, putative (SYP131) similar to
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein At-Syr1) {Arabidopsis thaliana}
          Length = 306

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 2   KLIRL*FSNMEGFDDPGVFFSDNFGVEENESQDHVNLQAVKKKFKEFMRQFHT--GNFNY 175
           K+  L   N+E    PG       GV+   +   +   AVKKKFK+ + +F T   N   
Sbjct: 99  KIEELDRENLENRTKPGC--GKGTGVDRTRTATTI---AVKKKFKDKISEFQTLRQNIQQ 153

Query: 176 KYRDALKR 199
           +YR+ ++R
Sbjct: 154 EYREVVER 161


>At2g12935.1 68415.m01417 hypothetical protein
          Length = 147

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 411 TFIKFEGA*IRNCIKTSEDSWYCNISIRY 497
           T +K +G     C   SE  W C  SIRY
Sbjct: 37  TSLKIDGIQTNTCRSISEAKWVCRRSIRY 65


>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc
           finger (ZZ type) family protein contains Pfam profiles
           PF02135: TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 397 LSSDAHSSNLRELKSETVSRLVKIPGIVISAS-GIK 501
           LS DA   + R LKSET+   V+IP   + A  GIK
Sbjct: 806 LSQDAERKDHRPLKSETMEVKVEIPDNSVQAGFGIK 841


>At3g22980.1 68416.m02898 elongation factor Tu family protein
           similar to eukaryotic translation elongation factor 2
           GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 151 LSHEFFEFLFDCL*INMILRFVFFYTKIIREKYTRIIKTFH 29
           L   + E L  CL +N I R +F       E YTR+I+  H
Sbjct: 119 LRQAWIEKLTPCLVLNKIDRLIFELRLSPMEAYTRLIRIVH 159


>At1g55800.1 68414.m06390 hypothetical protein
          Length = 314

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 89  ESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALKRNYN 208
           +S  H+ L    K+FK    + H G     Y+ A  R+ N
Sbjct: 255 DSSIHLELPRCTKRFKRVSLEMHNGELQRMYKLAKNRSLN 294


>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 379 EDIQVLLSSDAHSSNLRELKSETVSRLVKIPGIVISASGIK 501
           +DI V   +   +  LREL +  + +LV + G+V   S ++
Sbjct: 105 KDINVSFYNLPFTKRLRELTTAEIGKLVSVTGVVTRTSEVR 145


>At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 699

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 101 HVNLQAVKKKFKEFMRQFHTGNFNYKY 181
           ++N + +KKK K++ RQ   GN   ++
Sbjct: 20  YINYKLMKKKVKQYSRQLEGGNLERRH 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,290,785
Number of Sequences: 28952
Number of extensions: 162089
Number of successful extensions: 434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)