Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021181
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    29   0.63 
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    27   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   7.7  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 520 YICQRITQVS*GQL--SEDRNLAWSKRAKSGLIQMFSTHRDCESTAY 654
           Y+C  +  +S G L  SED ++ W    K+GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 528 TDVPPQSTPRLAVSSNRITREF*TAT 451
           T VPP+  P L+VS NR+ +   T T
Sbjct: 94  TSVPPEQDPSLSVSFNRLPKSASTKT 119


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 126 LISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLT*SGIVRRHERCSISGRS 305
           L S AH+ ++++P VP  +   P P+  + E   G    +    S  VR H+    +G  
Sbjct: 749 LASLAHDDLDDLPAVPRIFSPPPLPKTPSGE--FGDNEFMFPKKSNRVRGHQSRPSTGSQ 806

Query: 306 FRAIV 320
            R +V
Sbjct: 807 LRNVV 811


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 111 GYLKRVIVTPAVYPRLLEFLHVDIQST 31
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,862
Number of Sequences: 5004
Number of extensions: 59458
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)