Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021181
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 34 0.12
01_01_0613 - 4571689-4572348 32 0.37
01_06_0456 + 29521282-29522064 32 0.49
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.0
06_03_1448 + 30235336-30236763 29 4.5
06_03_1443 + 30182018-30183445 29 4.5
06_03_1440 + 30166515-30167942 29 4.5
06_03_1437 + 30151030-30152457 29 4.5
06_03_1429 + 30100834-30102261 29 4.5
06_03_1425 + 30084383-30085810 29 4.5
06_03_1420 - 30053713-30055140 29 4.5
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 4.5
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.5
05_05_0272 - 23738514-23738817,23739382-23740748 29 4.5
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 28 6.0
06_03_0951 - 26269386-26269394,26269501-26269609,26272761-262731... 28 7.9
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 28 7.9
04_01_0605 + 7944514-7944637,7944930-7945198,7945467-7945559,794... 28 7.9
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 105 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLT*SGIVRRHER 284
G+ PR + D EW N PT+ ++ + +PRE Q+ K + I+ E
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIF------ILNSDES 1446
Query: 285 CSISGR 302
CS+ G+
Sbjct: 1447 CSLKGK 1452
>01_01_0613 - 4571689-4572348
Length = 219
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 558 LALGHLRYSLTDVPPQSTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 382
L LGH YSL PP S P + N ++ ++S SA + +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQPVVVAGGN--NDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 500 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 378
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 129 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 28
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 505 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 368
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 505 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 368
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 505 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 368
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 505 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 368
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 505 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 368
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 505 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 368
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 505 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 368
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 397 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGS*LG 516
G+T+ R R A W RG A RR +LP G +AG LG
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLG 77
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 433 TTLHAWNETPCARRYY 386
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 549 GHLRYS-LTDVPPQSTPRLAVSSNRITREF*TATSVSATSPLCTLGTKH 406
G RY+ +TDVPP L V N IT EF T + +P ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446
>05_06_0020 +
24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -1
Query: 366 PNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTKSSSTGSSFPADSPKPVPL 199
P S E + + + E +S+ + +LQ S++ S P D K VPL
Sbjct: 732 PGTKSTEALSGMALAKTKVEPVSNKDHVPKPTLQANRASANCSKSTPVDMEKDVPL 787
>06_03_0951 -
26269386-26269394,26269501-26269609,26272761-26273149,
26273592-26273852,26275067-26275245,26275329-26275467
Length = 361
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 348 ETMKVVVFQRRSRETISHLCYTSHVSLQCQTKSSSTGSSFPADSPKPVPLAV 193
+ +V++ Q T+ + YTS ++ K STG D PLAV
Sbjct: 132 DAARVILRQCEESSTVKRVIYTSSMAATSPLKEDSTGFKDSIDESCWTPLAV 183
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 515 PSQLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 393
P QLPA + P T + +R +AF +S R ++T RPP
Sbjct: 398 PLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>04_01_0605 +
7944514-7944637,7944930-7945198,7945467-7945559,
7945824-7945958,7946448-7946538,7947837-7947929,
7948418-7948578,7948589-7948675
Length = 350
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 261 QTKSSSTGSSFPADSPKPVPLAVVSLDSR*GQW 163
Q +SS+T D PKP PL V+ L S QW
Sbjct: 290 QNRSSTTLVKVTCDGPKPSPLTVLGLVS--DQW 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,059,232
Number of Sequences: 37544
Number of extensions: 454121
Number of successful extensions: 1403
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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