Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021181
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 4.1
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 4.1
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 4.1
AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical ... 28 5.4
Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 28 7.1
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 28 7.1
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 28 7.1
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 28 7.1
AC024776-3|AAK68466.1| 453|Caenorhabditis elegans Hypothetical ... 28 7.1
Z75549-5|CAA99918.1| 364|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 9.4
>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein
M02E1.1a protein.
Length = 1077
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -3
Query: 514 PVNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTA 371
PVN P + L+ +AGV +G+ R T L ++N P + RPRTA
Sbjct: 866 PVNIPQPTSLDRPYAGVSDGN-TLRMATPLPSFNGRPPS--VVRPRTA 910
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = -1
Query: 351 NETMKVVVFQRRSRETISHLCYTSHVSLQ-----CQTKSSSTGSSFPADSPKPVPL 199
+E F++ S+ S L T+ Q Q+ S+S GSS P P PVPL
Sbjct: 152 DENQNAANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAPPPPVPL 207
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = -1
Query: 351 NETMKVVVFQRRSRETISHLCYTSHVSLQ-----CQTKSSSTGSSFPADSPKPVPL 199
+E F++ S+ S L T+ Q Q+ S+S GSS P P PVPL
Sbjct: 138 DENQNAANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAPPPPVPL 193
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = -1
Query: 351 NETMKVVVFQRRSRETISHLCYTSHVSLQ-----CQTKSSSTGSSFPADSPKPVPL 199
+E F++ S+ S L T+ Q Q+ S+S GSS P P PVPL
Sbjct: 138 DENQNAANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAPPPPVPL 193
>AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical
protein ZC190.4 protein.
Length = 629
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -1
Query: 420 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 286
+GT+ + DIID +P N +S++ + +++ R ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328
>Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical
protein T27F6.6 protein.
Length = 434
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -3
Query: 529 DRCTAPVNSPPGSVLE-PDHAGV---LNGDERFRHVTTLHAW 416
+ C +N PG L DH G+ D+RFRH +++ W
Sbjct: 299 EECEITLNQIPGEDLNYSDHVGLRARFTIDDRFRHEKSVNTW 340
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 219 NQRGKKTLLSLT*S------GIVRRHERCSISGRSFRAIVAEKPL-LSLFHYLL 359
N GK TLL L + G++RRH C I GR + + E PL LS +++
Sbjct: 430 NGAGKSTLLKLLCTDVMPTDGLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 482
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 528 TDVPPQSTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP-NRVS 352
T P+S R A + R+ + T T +A S T +AP I DR P NR+S
Sbjct: 69 TTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRIS 128
Query: 351 NE 346
E
Sbjct: 129 AE 130
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 219 NQRGKKTLLSLT*S------GIVRRHERCSISGRSFRAIVAEKPL-LSLFHYLL 359
N GK TLL L + G++RRH C I GR + + E PL LS +++
Sbjct: 429 NGAGKSTLLKLLCTDVMPTDGLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 481
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 219 NQRGKKTLLSLT*S------GIVRRHERCSISGRSFRAIVAEKPL-LSLFHYLL 359
N GK TLL L + G++RRH C I GR + + E PL LS +++
Sbjct: 430 NGAGKSTLLKLLCTDVMPTDGLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 482
>AC024776-3|AAK68466.1| 453|Caenorhabditis elegans Hypothetical
protein Y41D4B.16 protein.
Length = 453
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 561 ELALGHLRYSLTDVPPQSTPRLAVSSNRITREF*-TATSVSATSPLCTLGTKHRAPA 394
E+ L +++Y D +T A+SS T TATS + P T G +PA
Sbjct: 349 EMGLYYVQYFNMDTGAPTTTSAALSSTASTPSIASTATSAATNPPTTTAGASTNSPA 405
>Z75549-5|CAA99918.1| 364|Caenorhabditis elegans Hypothetical
protein T19C4.5 protein.
Length = 364
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 550 RTPALFFDRCTAPVNSPPGSVLEPDHAGVLNGDERFRHVTT 428
R AL+F+R +N G + E DH V R T
Sbjct: 174 RVSALYFERLANSMNEAAGQLQESDHLDVEKTQSRMEDAVT 214
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/72 (23%), Positives = 26/72 (36%)
Frame = -1
Query: 543 LRYSLTDVPPQSTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP 364
L T PP +T +A ++ +T T +TSP + A +P
Sbjct: 221 LNIGTTQTPPVTTSTMATTTANVTSAAPNTTVTISTSPTTVVTVPSTAQTSSTTTVTVPT 280
Query: 363 NRVSNETMKVVV 328
V+ T V V
Sbjct: 281 TTVTGPTTVVTV 292
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,005
Number of Sequences: 27780
Number of extensions: 344815
Number of successful extensions: 946
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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