Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021180
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    29   0.89 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   0.89 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.1  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   4.8  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   8.3  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQKWFGNHL 537
           SP H   +SP+ R P   SPSR    +     S      + KP   E +K  GN++
Sbjct: 73  SPHHGPVRSPSSRKPLPASPSRTRDHSLRVPVSGHSYSADEKP--RERRKVIGNYV 126


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 409 TPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQKWFGN 531
           T  ++ PSR      S +KS ARA  E +P+A++++ + GN
Sbjct: 200 TCEKRKPSRSPSPMLSKKKSVARA-SENEPSAKQNKSFSGN 239


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +1

Query: 367 VSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQKWFGNH 534
           VSP   AKK  ++   + K P ++  + + +R   ++ P+ +K +      + G H
Sbjct: 475 VSPKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENLKESHVNETPYRGLH 530


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 394 SPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVK 495
           SP   TPT+ SP  K+P +  A  S +      K
Sbjct: 14  SPAMETPTKASPDSKSPNSVGAIPSSSPLASSTK 47


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 353 GEFFRLLAGERDGETLFLVCTGLVS*ILNLILPYE*TYCNINRVSLIC 210
           G F R+  GERDG+ ++ +C   V  IL    PY      + +VSL C
Sbjct: 245 GCFVRVKIGERDGQGVYRLCQ--VKGILESRKPYR-VDGVLTKVSLEC 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,281
Number of Sequences: 5004
Number of extensions: 53515
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)