Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021180
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 32 0.53
07_03_1107 - 24024387-24024497,24025799-24026410 32 0.53
03_04_0029 - 16610182-16611753 31 0.93
10_01_0184 + 2064135-2064150,2064438-2064485,2065541-2065806,206... 29 2.8
05_05_0392 + 24629528-24630442 29 3.8
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 29 3.8
12_02_0458 - 19244972-19245073,19245299-19245673,19245772-192458... 29 5.0
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 5.0
01_01_0139 + 1263356-1264273 29 5.0
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 28 6.6
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 6.6
01_06_0922 - 33022709-33023545 28 6.6
10_01_0251 + 2641320-2643272 28 8.7
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 373 PAHPAKKSP--NQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEH 513
P PAK +P +++P +P +P + + P+ PK P+ EE+
Sbjct: 933 PPSPAKSTPPPEEKSPPSHTPESSSPPSEESEPPPSPTPKSSPPSHEEY 981
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTN-FSARKSPARAPKEVKPTAEE 510
P +KSP +P + PS PT+ + KSP +E P E
Sbjct: 776 PEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPE 819
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPT 501
+P PA +P + PT +P++ PT + K+PA APK K T
Sbjct: 65 APTTPATPAPAE-APTTPAPTKAPPT--KSTKAPAPAPKAAKAT 105
>03_04_0029 - 16610182-16611753
Length = 523
Score = 31.1 bits (67), Expect = 0.93
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA-RAP 483
S A PA SP+ +P SPS ++ RKSPA RAP
Sbjct: 70 STAAPAAASPSIASPAASSPSDVPSSSSKKRKSPAHRAP 108
>10_01_0184 +
2064135-2064150,2064438-2064485,2065541-2065806,
2065986-2066054,2066429-2066980,2067433-2067453
Length = 323
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQ 516
SP + R P SPS T F+AR+ A +PT EH+
Sbjct: 128 SPRRCLTREVELRQPRAPSPSYIMATFFTARRRKAELVAPARPTPHEHK 176
>05_05_0392 + 24629528-24630442
Length = 304
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARA 480
SP P ++ P +R PTR+SPS T R++ A A
Sbjct: 174 SPPPPPRREPGER-PTRRSPSPATKRPPDQRRTAASA 209
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTA 504
SPA PA K+P P K+ + P ARK+PA A K TA
Sbjct: 4 SPAAPAPKAPAAAGPAPKATAPAGP----ARKAPAAAGPAPKATA 44
>12_02_0458 -
19244972-19245073,19245299-19245673,19245772-19245878,
19245971-19246014,19246110-19246254,19246348-19246486,
19246855-19247091
Length = 382
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -1
Query: 383 GCAGDTFLARGEFFRLLAGERDGETLFLVCTGLVS*ILNLILPYE*TYCNINRVSLICSK 204
G G+T + FF L + LF + G+ I +LI Y + ++ ++ICS
Sbjct: 61 GQVGETRPSMPSFFTQLTQDNWPSVLFAMAGGIALSIGHLISQYAWAFVGLSVTNIICSS 120
Query: 203 INI--RTTRNEYI 171
+ + TT N ++
Sbjct: 121 LAVVLGTTMNYFL 133
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 373 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTA 504
PA P SP+ P R SPS+ P ++ K P + P A
Sbjct: 197 PAEPPVPSPSPEHPPRHSPSK--PPAYAPAKPPTALRPAIPPAA 238
>01_01_0139 + 1263356-1264273
Length = 305
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Frame = +1
Query: 367 VSPAHPAKKSPNQRTPTRK---------SPSRKTPTNFSARKSPARAPKEVKPTAEEH 513
++P P+ + P PTR+ +PS T R++ AR+P P EH
Sbjct: 103 LAPWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTSARARTRRAHARSPAAASPALLEH 160
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKP 498
S A P++K P T SP K + S +SP + PK +P
Sbjct: 56 SDAGPSQKVPEVEAQTN-SPLGKDADSESETRSPVKTPKSTRP 97
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 373 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKP 498
P+ SP PT+ P PT AR PA A E KP
Sbjct: 58 PSPSPSPSPPAGKPTKPHPESTPPTKTPARSKPAAAAAE-KP 98
>01_06_0922 - 33022709-33023545
Length = 278
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
SP+ AK++P QR +PS + R SP R +E P+ E
Sbjct: 182 SPSPAAKRTPEQRRAASPAPSLQRKPPVPVRPSPRRV-QEAPPSPLE 227
>10_01_0251 + 2641320-2643272
Length = 650
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 97 DFN*EILIHLFKINHKNIIRTNTILTPDNN 8
+F E+++H +INHKNI+R T NN
Sbjct: 76 EFAKEVIVHS-QINHKNIVRLIGYCTEKNN 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,781
Number of Sequences: 37544
Number of extensions: 315188
Number of successful extensions: 994
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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