Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021180
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.077
SB_41056| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39) 33 0.31
SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_36172| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_51925| Best HMM Match : DIX (HMM E-Value=0.75) 31 1.3
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 31 1.3
SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_8064| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 30 2.2
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 29 2.9
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38) 29 3.8
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 3.8
SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_25699| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 29 3.8
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 3.8
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 29 5.1
SB_53577| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_38479| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_6084| Best HMM Match : DUF326 (HMM E-Value=1.1) 29 5.1
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 5.1
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 28 6.7
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37) 28 6.7
SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30) 28 6.7
SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1) 28 6.7
SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37) 28 6.7
SB_29375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_49062| Best HMM Match : GLTT (HMM E-Value=6e-25) 28 8.9
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_12695| Best HMM Match : Linker_histone (HMM E-Value=1.6e-38) 28 8.9
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_44588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_37414| Best HMM Match : GLTT (HMM E-Value=0.00024) 28 8.9
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 28 8.9
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 28 8.9
SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 28 8.9
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSA---RKSPARAPKEVKPTAEEH 513
SP P + +P TPT +P+ KTPT ++ + +PA P KPT H
Sbjct: 60 SPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAH 110
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 373 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEH 513
P +P + TPT +P+ TPT + K + P PT H
Sbjct: 94 PTPATTPTPTKPTPTAHTPTTPTPTAHTPTKPTPKTPTPTTPTPTAH 140
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPT 501
SP P +P Q TPT +PS PT +PA P PT
Sbjct: 40 SPTTPTSTAPTQTTPTPTTPSPTAPT--QTTPTPA-TPTPTTPT 80
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 409 TPTRKSPSRKTPTNFSARKSPARAPKEVKPT 501
TPT+ +P+ TPT S + AP + PT
Sbjct: 25 TPTKPTPTTHTPTKPSPTTPTSTAPTQTTPT 55
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPT 501
P K +P TPT+ SP+ T T + P PT
Sbjct: 26 PTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPT 65
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 34.7 bits (76), Expect = 0.077
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEH 513
+P P KSP + +P RKS RKT FS +K + + ++H
Sbjct: 178 TPLPPPSKSPKKSSPKRKSGKRKTSLKFSHKKRQKAWKRLQRAATDDH 225
>SB_41056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
AKK + TP++K+ S K P A KSP +A K KP A++
Sbjct: 146 AKKPAAKTTPSKKAKSPKKPAPKKATKSPKKAAK--KPVAKK 185
>SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39)
Length = 370
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
AKK + TP++K+ S K P A KSP +A K KP A++
Sbjct: 306 AKKPAAKTTPSKKAKSPKKPAPKKATKSPKKAAK--KPVAKK 345
>SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
AKK + TP++K+ S K P A KSP +A K KP A++
Sbjct: 146 AKKPAAKTTPSKKAKSPKKPALKKATKSPKKAAK--KPVAKK 185
>SB_36172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
AKK + TP++K+ S K P A KSP +A K KP A++
Sbjct: 35 AKKPAAKTTPSKKAKSPKKPALKKATKSPKKAAK--KPVAKK 74
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 388 KKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKE 489
KKSP + + KSP++ T ++ + KSP +A KE
Sbjct: 200 KKSPKRSSHEAKSPTKSTSSHDTKSKSPCKATKE 233
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 367 VSPAHPAKKSPNQRTPTRKS---PSRKTPTNFSARKSPARAPKEVKP 498
V HP+ + P + PT ++ P+R P ++PA+AP E P
Sbjct: 1738 VGRGHPSTREPQRTAPTPRTQQPPARAPPAQPPTYRNPAQAPFEATP 1784
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 31.1 bits (67), Expect = 0.95
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 394 SPNQRTPTRKSPSRKTPTNFSARKSPARAPK 486
SP +R P R+SPS P + ++S +R+PK
Sbjct: 1093 SPPKREPRRRSPSASPPRREARKRSLSRSPK 1123
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTP--TRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQK 519
SP ++SP +RT + +SP R++P + SPAR+ + + H K
Sbjct: 653 SPFRERRRSPPRRTSRWSSQSPDRRSPARI--KSSPARSRSRSQSASPRHSK 702
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPT-NFSARKSPA-RAPKEVKPT 501
P+++ P++R P+R+ PSR+ P+ +R+ P+ R P P+
Sbjct: 69 PSRRLPSRRLPSRRLPSRRLPSRRLPSRRLPSGRLPSRRLPS 110
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPT-NFSARKSPAR 477
P+ + P++R P+R+ PSR+ P+ +R+ P+R
Sbjct: 64 PSGRLPSRRLPSRRLPSRRLPSRRLPSRRLPSR 96
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPT-NFSARKSPAR 477
P+ + P+ R P+R+ PSR+ P+ +R+ P+R
Sbjct: 59 PSGRLPSGRLPSRRLPSRRLPSRRLPSRRLPSR 91
>SB_51925| Best HMM Match : DIX (HMM E-Value=0.75)
Length = 256
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 376 AHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQK 519
A P++ SP + TP+ SP + TP+ S ++ P EV P H +
Sbjct: 182 ATPSEVSPIETTPSEVSPIKTTPSEVSPIET---TPSEVSPIKTTHSE 226
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 367 VSPAH--PAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
VSP P++ SP + TP+ SP TP+ S K+ +K T E
Sbjct: 187 VSPIETTPSEVSPIKTTPSEVSPIETTPSEVSPIKTTHSEVSPIKTTPSE 236
>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKP 498
A++SP PTR S + +P++ A + P + +EV P
Sbjct: 186 ARQSPQGTRPTRPSSAHASPSSIYAPRDPRQFAREVPP 223
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKP 498
A++SP PTR S + +P++ A + P + +EV P
Sbjct: 1767 ARQSPQGTRPTRPSSAHASPSSIYAPRDPRQFAREVPP 1804
>SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 388 KKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
KK + TP+ K+ S K P A KSP +A K KP A++
Sbjct: 233 KKPAAKTTPSNKAKSPKKPAPKKATKSPKKAAK--KPVAKK 271
>SB_8064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = -2
Query: 358 LEGSFFDFWRE--NETAKLFSLSAPDL 284
+E SFFDF+RE + +LF++S+P+L
Sbjct: 110 VESSFFDFYREYDGDIKELFAMSSPEL 136
>SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQKWFGNHLQNAQL*NP 561
P++++P Q TP++++P + TP+ + +S + T + + Q A P
Sbjct: 300 PSQQAPYQSTPSQRAPYQSTPSQRAPYQSTPSQQASYQSTPSQRAPYQSTPSQQAPYQKP 359
Query: 562 ICLLN*KI*LP 594
L + +P
Sbjct: 360 FILFGTSLFIP 370
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKS-PA-RAPKEVKPT 501
P++++P Q TP++++P + TP+ + +S P+ RAP + P+
Sbjct: 280 PSQQAPYQSTPSQQAPYQSTPSQQAPYQSTPSQRAPYQSTPS 321
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKS-PA-RAPKEVKPTAE 507
P++++P Q TP +++P + TP+ + +S P+ +AP + P+ +
Sbjct: 250 PSQQAPYQSTPAQQAPYQSTPSQIAPYQSTPSQQAPYQSTPSQQ 293
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/44 (29%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKS-PA-RAPKEVKPTAE 507
P++++P Q TP++++P + TP+ + +S P+ +AP + P+ +
Sbjct: 210 PSQQAPYQSTPSQRAPYQSTPSQQAPYQSTPSQQAPYQSTPSQQ 253
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKP 498
S + +SP +P R P+R +P F + S A P +P
Sbjct: 474 SYCNAVSRSPGYYSPLRDKPARSSPLAFREQPSSASTPSGARP 516
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEV--KPTAEEHQK 519
PAKKS ++ +K ++K+P S + + + PK+V KP A++ K
Sbjct: 600 PAKKSTPKKA--KKPAAKKSPKKLSKKPAAKKTPKKVAKKPAAKKSSK 645
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 373 PAHPAKKSPNQRTPTRKSPSRKTPTNFSAR--KSPARAPKEVKPTA 504
P P ++SP + TP P + TP S P +PK V P A
Sbjct: 520 PTSPTQQSPLETTPVLPLPEKVTPEPGSTTPPSPPPDSPKSVAPPA 565
>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
Length = 234
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEV--KPTAEE 510
AKK +++ K P+ K +A K P+++PK+ KP A++
Sbjct: 147 AKKPASKKPKAAKKPAAKKSPKKAAAKKPSKSPKKAAKKPAAKK 190
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 403 QRTPTRK-SPSRKTPTNFSARKSPARAPKEVKPTAEEHQK 519
Q TPT K +P+ + F+A +P R+PK V P+ E K
Sbjct: 678 QATPTTKEAPADSEHSTFAAETAP-RSPKSVSPSGEVQVK 716
>SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
AKK + TP++K+ S K P A KS +A K KP A++
Sbjct: 109 AKKPAAKTTPSKKAKSPKKPAPKKATKSHKKAAK--KPVAKK 148
>SB_25699| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 179
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPS-RKTPTNFSARKSPARAPKEVKPTAEEHQK 519
AKK ++ K P+ +K+P +A+KSP +A K KP A++ K
Sbjct: 100 AKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAK--KPAAKKATK 143
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +1
Query: 379 HPAKKSPNQRTPTRKSPSRKTPTNFSARKS----PARAPKEVKPTA 504
H + SP Q +P + S K+P +F A KS P R+P KP++
Sbjct: 402 HSGQSSPRQASPPQ---SVKSPIHFQANKSPPFHPQRSPSASKPSS 444
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 403 QRTPTRK-SPSRKTPTNFSARKSPARAPKEVKPTAEEHQK 519
Q TPT K +P+ + F+A +P R+PK V P+ E K
Sbjct: 511 QATPTTKEAPADSEHSTFAAETAP-RSPKSVSPSGEVQVK 549
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKSP--ARAPKEVKPTAEEHQK 519
P K+ P Q P + P ++ P ++ PK+ +P EE ++
Sbjct: 60 PVKEEPKQEEPVEEEPKQEEPVEQKPKQEEPVEEEPKQEEPVEEEQKQ 107
>SB_53577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFS 456
SP+ P+ SP+ +P+ SPS +P+++S
Sbjct: 8 SPSSPSPDSPSPDSPSSYSPSPDSPSSYS 36
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSA 459
SP P+ SP+ +P+ SPS +P+++S+
Sbjct: 18 SPDSPSSYSPSPDSPSSYSPSLDSPSSYSS 47
>SB_38479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 382 DAQEIPSLLEGSFFDFWRE-NETAKLFSLSAPDLSP 278
D +++ SL+ G F+ FWR ET F D+SP
Sbjct: 47 DGRDVYSLISGQFWLFWRNTGETPLSFIQLVTDVSP 82
>SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 379 HPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQK 519
H + ++ + K RKTP N++ +K+ KE+ T+ H++
Sbjct: 365 HAYNEEDIEKIVSEKQKFRKTPFNYAIKKNELIRRKEIAETSGNHEE 411
>SB_6084| Best HMM Match : DUF326 (HMM E-Value=1.1)
Length = 245
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 329 PPEVEKTPLEQGRYLLRILLKNRPTKELQQESRLAEKPQPI 451
P ++KT ++ RY +I K PT L A PQPI
Sbjct: 130 PARLQKTIMKLQRYQFKITYKRGPTLYLADTLSRAALPQPI 170
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAP 483
P ++SP +T R SP R++P+ + + +R+P
Sbjct: 226 PVRQSPFNKTHRRLSPPRRSPSPYRNMRIKSRSP 259
>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 382 PAK-KSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 486
P+K S + RT +R +P+R TP+ S+R +P++ P+
Sbjct: 241 PSKTSSKSSRTSSRTTPARATPSRKSSR-TPSQTPR 275
>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 184
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPS-RKTPTNFSARKSPARAPKEVKPTAEE 510
AKK ++ K P+ +K+P +A+KSP +A K KP A++
Sbjct: 100 AKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAK--KPAAKK 140
>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
Length = 184
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPS-RKTPTNFSARKSPARAPKEVKPTAEE 510
AKK ++ K P+ +K+P +A+KSP +A K KP A++
Sbjct: 100 AKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAK--KPAAKK 140
>SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30)
Length = 279
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPS-RKTPTNFSARKSPARAPKEVKPTAEE 510
AKK ++ K P+ +K+P +A+KSP +A K KP A++
Sbjct: 195 AKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAK--KPAAKK 235
>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
Length = 210
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNF---SARKSPARAPKEVKPTAEE 510
PAKK + + +KSP + P S +K+P ++PK+ T ++
Sbjct: 90 PAKKETKKES--KKSPKKSKPVTVKITSGKKTPKKSPKKAHKTVDD 133
>SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37)
Length = 184
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPS-RKTPTNFSARKSPARAPKEVKPTAEE 510
AKK ++ K P+ +K+P +A+KSP +A K KP A++
Sbjct: 100 AKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAK--KPAAKK 140
>SB_29375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKP 498
P K +P + P + +P P ++ +S P E KP
Sbjct: 66 PVKYTPVESVPVKHTPVESAPVKYTPMESAPYTPVESKP 104
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 383 GCAGDTFLARGEFFRLLAGERDGETLFLVCTGLVS*ILNLILPYE 249
G G +L + E FRL G+TL ++C V ++ LIL Y+
Sbjct: 4046 GTGGGIYLLKVETFRLYPHVGPGQTLVILCEITVV-VVTLILAYK 4089
>SB_49062| Best HMM Match : GLTT (HMM E-Value=6e-25)
Length = 407
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 503 AVGFTSLGARA-GDLRAEKLVGVFRLGDFLVGVLWLGDFLAGCA--GDT 366
++G TS+G + GD VGV +GD GV+ +GD G GDT
Sbjct: 264 SMGDTSVGVLSTGDTSVIPPVGVVSMGDTSEGVVLMGDTSEGVVLMGDT 312
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQK 519
PA SP Q TP SP +PT+ + R S +AP K E +K
Sbjct: 398 PAPVSPAQPTPP--SPGPTSPTSPNGRASLKKAPDPSKQPRELKKK 441
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 367 VSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVK 495
VSPA P SP +PT SP+ + + P++ P+E+K
Sbjct: 401 VSPAQPTPPSPGPTSPT--SPNGR--ASLKKAPDPSKQPRELK 439
>SB_12695| Best HMM Match : Linker_histone (HMM E-Value=1.6e-38)
Length = 184
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 373 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARA-PKEV---KPTAEEHQK 519
PA KSP + P + + S K A K PA A PK+ KP A++ K
Sbjct: 118 PAAKKAKSPKKSAPKKATKSPKKTAKKPAAKKPAAAKPKKAAAKKPAAKKAAK 170
>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 382 PAKKSPNQRTPTRKSPSR-KTPTNFSARKSPARAPKEVKPTAEEHQKWFGNHLQNAQL 552
P K R TR+ R KT + + P + K+V TA HQKW +H Q+
Sbjct: 180 PENKHCRHRQLTREECKRSKTFYDINDAPKPCKTEKKVSCTA--HQKWRESHQSRIQV 235
>SB_44588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
AKK ++ +K+ S K P A KSP +A K KP A++
Sbjct: 110 AKKPAAKKPAAKKAKSPKKPAPKKATKSPKKAAK--KPAAKK 149
>SB_37414| Best HMM Match : GLTT (HMM E-Value=0.00024)
Length = 286
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 503 AVGFTSLGARA-GDLRAEKLVGVFRLGDFLVGVLWLGDFLAGCA--GDT 366
++G TS+G + GD VGV +GD GV+ +GD G GDT
Sbjct: 216 SMGDTSVGVLSTGDTSVIPPVGVVSMGDTSEGVVLMGDTSEGVVLMGDT 264
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 367 VSPA-HPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAP 483
VSPA + SP+ R P R SPS + P + ++ ++P +P
Sbjct: 217 VSPAFRNPRDSPSSRNP-RDSPSSRDPRDSTSSRNPRDSP 255
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 382 PAKKSPNQRTP---TRKSPSRKTPTNFSARK-SPARAPKEVKP 498
P+K ++RTP T KSPS K RK SP A K+ P
Sbjct: 996 PSKAESSERTPRKTTEKSPSGKGVRGKDERKDSPKEARKKTSP 1038
>SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 385 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEE 510
AKK ++ +K+ S K P A KSP +A K KP A++
Sbjct: 173 AKKPAAKKPAAKKAKSPKKPAPKKATKSPKKAAK--KPAAKK 212
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 382 PAKKSPNQRTP---TRKSPSRKTPTNFSARK-SPARAPKEVKP 498
P+K ++RTP T KSPS K RK SP A K+ P
Sbjct: 355 PSKAESSERTPRKTTEKSPSGKGVRGKDERKDSPKEARKKTSP 397
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,500,666
Number of Sequences: 59808
Number of extensions: 378415
Number of successful extensions: 1505
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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