Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021180
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +2

Query: 380 ILLKNRPTKELQQESRLAEKPQPI 451
           IL  +RP+ + ++E++ ++KP P+
Sbjct: 343 ILRMSRPSDKEEREAQKSQKPSPV 366


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 478 HEQEICEQKNWLGFFG*ATFL 416
           H +E+  Q N +GF G  TFL
Sbjct: 867 HLRELYLQNNLIGFIGNLTFL 887


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 445 TNFSARKSPARAPKEVKPTAE 507
           TN      PAR  +E KP AE
Sbjct: 21  TNLDPPTRPARLRREAKPEAE 41


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 443 GVFRLGDFLVGVLWLGDFLAGCAGDTF 363
           G+ R+G+  +  L + D   GC   TF
Sbjct: 55  GLRRIGNLFLASLAIADLFVGCLVMTF 81


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 647 DVTSTNSQIIIESVNGVESKNYH 715
           D +S + Q+II   NG+++   H
Sbjct: 255 DESSPHDQVIIGGSNGLDTSKVH 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,501
Number of Sequences: 438
Number of extensions: 3499
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)