Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021180
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 34 0.083
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 34 0.083
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 31 0.59
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family... 30 1.4
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 30 1.4
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 30 1.4
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.8
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.8
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 30 1.8
At3g28790.1 68416.m03593 expressed protein 29 4.1
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 29 4.1
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 29 4.1
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 28 5.5
At2g31040.1 68415.m03786 ATP synthase protein I -related contain... 28 5.5
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 28 7.2
At3g24600.1 68416.m03090 hypothetical protein 28 7.2
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 34.3 bits (75), Expect = 0.083
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = +1
Query: 406 RTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQKWFGNHLQN 543
RTPT +PS +TP + +K A P + T EE QK G HLQN
Sbjct: 580 RTPTSATPSGRTP---ALKKPKANEPNKRDMTYEEKQKLSG-HLQN 621
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 34.3 bits (75), Expect = 0.083
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = +1
Query: 406 RTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQKWFGNHLQN 543
RTPT +PS +TP + +K A P + T EE QK G HLQN
Sbjct: 580 RTPTSATPSGRTP---ALKKPKANEPNKRDMTYEEKQKLSG-HLQN 621
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 367 VSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEH 513
+SP+H SP +P+ KSPS P + S SPA P H
Sbjct: 194 LSPSHATSHSPATPSPSPKSPS---PVSHSPSHSPAHTPSHSPAHTPSH 239
>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
protein identical to gi|4775268|emb|CAB42531
Length = 150
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 486
+P+ KKSP+ K+P+ T + K+PA APK
Sbjct: 23 APSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAPK 61
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRK--SPSRKTPTNFSA-RKSPARAPKEVKPT 501
+P H SP++ PT SP+ TP + A K+P AP E P+
Sbjct: 27 APIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPS 73
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRK--SPSRKTPTNFSA-RKSPARAPKEVKPT 501
+P H SP++ PT SP+ TP + A K+P AP E P+
Sbjct: 27 APIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPS 73
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 376 AHPAKKSPNQRTPTRKSPSRK-TPTNFSARKSPARAPKEVKPTAEEHQK 519
A PA++SP +P + SP+R+ +P S +SP+ + + P + QK
Sbjct: 214 ASPARRSPRSSSPQKTSPAREVSPDKRSNERSPS-PRRSLSPRSPALQK 261
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 376 AHPAKKSPNQRTPTRKSPSRK-TPTNFSARKSPARAPKEVKPTAEEHQK 519
A PA++SP +P + SP+R+ +P S +SP+ + + P + QK
Sbjct: 214 ASPARRSPRSSSPQKTSPAREVSPDKRSNERSPS-PRRSLSPRSPALQK 261
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +1
Query: 373 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQK 519
P PA K P + P K P+ K PT K P P PT + H K
Sbjct: 47 PKPPAVKPP--KPPAVKPPTPKPPTVKPHPKPPTVKPHPKPPTVKPHPK 93
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 373 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 486
P P K P+ + PT+ P K P K P PK
Sbjct: 92 PKPPTVKPPHPKPPTKPHPHPKPPIVKPPTKPPPSTPK 129
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAE 507
+P+ P +P TPT +P+ TPT + S A K + +E
Sbjct: 282 TPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPSTPAAGKTSEKGSE 327
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 471
SP+ P+ SP TPT +PS TPT + +P
Sbjct: 66 SPSTPSHPSPPSHTPTPSTPSH-TPTPHTPSHTP 98
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 471
SP+ P+ SP TPT +PS TPT + +P
Sbjct: 66 SPSTPSHPSPPSHTPTPSTPSH-TPTPHTPSHTP 98
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 285 KSGADKEKSFAVSFSRQKSKKLPSSKEGISCA 380
K + ++SF+ +FSR+KS K P G+S A
Sbjct: 354 KHATELQQSFSRTFSRRKSMKQPDLMRGLSQA 385
>At2g31040.1 68415.m03786 ATP synthase protein I -related contains
weaks similarity to Swiss-Prot:P08443 ATP synthase
protein I [Synechococcus sp.]
Length = 350
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 370 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEEHQKWFGNHLQN 543
+P P +SPN R PT+ K P +S +P PT + +K++G ++
Sbjct: 13 TPPIPQDQSPNSRLPTKIILPNKKPEKWSTGVAPGEYGG--PPTTTKLRKYWGGEKED 68
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 367 VSPAHPAKKSPNQRTPTRK-SPSRKTPTNFSARKSPARAP 483
VSP SPN TP+ K S + + + S++ SPA++P
Sbjct: 54 VSPMRSPVTSPNGTTPSNKTSIVKSSMPSSSSKASPAKSP 93
>At3g24600.1 68416.m03090 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -2
Query: 715 VIIFRFYSIHTFYYNLAISRCNISQRII--DSS--VTSIA*AFKMAVKSSSLTDKLDFKA 548
++ + IH+FYY I R ++ +I+ +SS VT + A + SS T KL F A
Sbjct: 345 IVSVKSVDIHSFYYGEGIDRTGVATKILSFNSSVKVTIDSPAPYFGIHVSSSTFKLTFSA 404
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,731,469
Number of Sequences: 28952
Number of extensions: 270438
Number of successful extensions: 908
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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