Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021178
(790 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein. 84 5e-18
AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein. 84 5e-18
AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein. 84 5e-18
AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein. 84 5e-18
U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles ... 50 6e-08
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 27 0.049
>AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 83.8 bits (198), Expect = 5e-18
Identities = 35/84 (41%), Positives = 57/84 (67%)
Frame = +1
Query: 511 TGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 690
TGSG +LL+ ++ +Y + +++ P+P+VS VVEPYN+ L+ H +E++D + +
Sbjct: 39 TGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCI 98
Query: 691 DNEAIYDICRRNLDIERPTYTNLN 762
DNEA+YDIC R L + P+Y +LN
Sbjct: 99 DNEALYDICFRTLKVPNPSYGDLN 122
Score = 48.0 bits (109), Expect = 3e-07
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 398 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGG 508
HYT G E+VD VLD +RK + C LQGF + HS GG
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGG 37
>AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 83.8 bits (198), Expect = 5e-18
Identities = 35/84 (41%), Positives = 57/84 (67%)
Frame = +1
Query: 511 TGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 690
TGSG +LL+ ++ +Y + +++ P+P+VS VVEPYN+ L+ H +E++D + +
Sbjct: 39 TGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCI 98
Query: 691 DNEAIYDICRRNLDIERPTYTNLN 762
DNEA+YDIC R L + P+Y +LN
Sbjct: 99 DNEALYDICFRTLKVPNPSYGDLN 122
Score = 48.0 bits (109), Expect = 3e-07
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 398 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGG 508
HYT G E+VD VLD +RK + C LQGF + HS GG
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGG 37
>AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 83.8 bits (198), Expect = 5e-18
Identities = 35/84 (41%), Positives = 57/84 (67%)
Frame = +1
Query: 511 TGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 690
TGSG +LL+ ++ +Y + +++ P+P+VS VVEPYN+ L+ H +E++D + +
Sbjct: 39 TGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCI 98
Query: 691 DNEAIYDICRRNLDIERPTYTNLN 762
DNEA+YDIC R L + P+Y +LN
Sbjct: 99 DNEALYDICFRTLKVPNPSYGDLN 122
Score = 48.0 bits (109), Expect = 3e-07
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 398 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGG 508
HYT G E+VD VLD +RK + C LQGF + HS GG
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGG 37
>AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 83.8 bits (198), Expect = 5e-18
Identities = 35/84 (41%), Positives = 57/84 (67%)
Frame = +1
Query: 511 TGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 690
TGSG +LL+ ++ +Y + +++ P+P+VS VVEPYN+ L+ H +E++D + +
Sbjct: 39 TGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCI 98
Query: 691 DNEAIYDICRRNLDIERPTYTNLN 762
DNEA+YDIC R L + P+Y +LN
Sbjct: 99 DNEALYDICFRTLKVPNPSYGDLN 122
Score = 48.0 bits (109), Expect = 3e-07
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 398 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGG 508
HYT G E+VD VLD +RK + C LQGF + HS GG
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGG 37
>U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles
gambiae putativetubulin alpha chain mRNA, complete cds.
).
Length = 91
Score = 50.4 bits (115), Expect = 6e-08
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWE 146
MRECISVHVGQAGVQIGN CW+
Sbjct: 1 MRECISVHVGQAGVQIGNPCWD 22
Score = 33.9 bits (74), Expect = 0.006
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 136 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELQARTPC 273
P T WS AS+ RCP+TR S E +++ + + P L + C
Sbjct: 19 PCWDCTVWSMASNRTVRCPRTRRS--EAVMTRSTPSSPRLAQASTC 62
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 27.5 bits (58), Expect(2) = 0.049
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 187 CPQTRPSGVETILSTLSSARPELQARTPCCLR 282
C RPS ++ ++ S RP+L A + C R
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAANSATCWR 195
Score = 21.8 bits (44), Expect(2) = 0.049
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 130 VMPAGSFTAWSTASSLMARCPQTRPSGV 213
V+ AG F AW TA +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,531
Number of Sequences: 2352
Number of extensions: 19357
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -