Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021177
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 33 0.25
09_02_0590 - 10978335-10978728,10978855-10979044,10979130-109791... 32 0.58
07_03_0990 + 23173868-23174200 31 1.3
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 31 1.3
09_02_0591 - 10997771-10998054,10998671-10999017,10999088-109992... 30 1.8
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 30 2.3
03_05_0051 - 20288456-20291728 29 3.1
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 7.1
11_02_0116 + 8463755-8463951,8464016-8464097,8471823-8472338 28 9.4
08_01_0273 - 2203828-2204124,2204812-2205072,2205161-2205296,220... 28 9.4
>01_05_0495 +
22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 630 TKVCITAMCWKKQHGFLPIVNFSWSTFG 547
T++C+ + WKK +GFL +V + TFG
Sbjct: 755 TEICLENLTWKKANGFLHLVEEIFGTFG 782
>09_02_0590 -
10978335-10978728,10978855-10979044,10979130-10979198,
10980061-10980187,10980562-10980824,10980928-10981076,
10981186-10981260,10983391-10983462,10983554-10983692,
10983796-10984265,10985278-10985854,10986997-10987063
Length = 863
Score = 31.9 bits (69), Expect = 0.58
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 684 GSNSRKVNIVMTTQIGHKTKVCITAMCWKKQH 589
G N + T++ H+ VC+ CW+K+H
Sbjct: 597 GLNEFLAEVQSLTKVHHRNLVCLVGYCWEKEH 628
>07_03_0990 + 23173868-23174200
Length = 110
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/28 (60%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 688 MDFYSMAIVGRRMRETGRFLYPG-ELSG 768
MDFY GR R TGRFLY G LSG
Sbjct: 57 MDFYYDRAHGRVQRGTGRFLYDGRRLSG 84
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 616 YADFCLMTYLCCHYDIDFPAVAAGMDFYSMAIVGRRMRETGRFLYPG 756
Y + + Y+C ++ FPA+AA M ++ IV M+ G F + G
Sbjct: 70 YVNLRIGPYVCAEWNFGFPALAAEMQKFTTKIV-EMMKSEGLFEWQG 115
>09_02_0591 -
10997771-10998054,10998671-10999017,10999088-10999247,
10999333-10999401,11000256-11000382,11000759-11001021,
11001122-11001279,11001390-11001464,11002876-11002947,
11003039-11003177,11003275-11003744,11003907-11003935
Length = 730
Score = 30.3 bits (65), Expect = 1.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 648 TQIGHKTKVCITAMCWKKQH 589
T++ H+ VC+ CW+K+H
Sbjct: 407 TKVHHRNLVCLVGYCWEKEH 426
>05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 285 WDL-VKTMALDKIYSPEDLKDFVAKSVYLDNFIDAESTRTGVSKTELHKEVLNYLEEMGL 461
W++ VK + K+ S ++L A +VY D+ + + + K + ++ E+GL
Sbjct: 825 WEIMVKIGLIGKLTSLQELWIEPAAAVYDDDAASVDDDDDAAAVDDTTKSTMKFVNELGL 884
Query: 462 DKKLHVIR 485
++L V+R
Sbjct: 885 LRELRVLR 892
>03_05_0051 - 20288456-20291728
Length = 1090
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 309 LDKIYSPEDLKD-FVAKSVYLDNFIDAESTRTGVSKTELHKEVLNYLEEMGLDKKLHVIR 485
L+ I +P++ K+ + K V L + + ++ EVL YL+ K+L +I
Sbjct: 716 LENIDAPDEAKEAMLCKKVNLTMLQLMWAPARDLVNSDKEAEVLEYLQPHPNLKRLDIIG 775
Query: 486 WMGV 497
WMGV
Sbjct: 776 WMGV 779
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 399 TGVSKTELHKEVLNYLEEMGLDKKLHVIRWM 491
TGV++ ELH+++L+ EE DK L I++M
Sbjct: 1230 TGVNENELHQQLLSITEER--DKLLSEIKYM 1258
>11_02_0116 + 8463755-8463951,8464016-8464097,8471823-8472338
Length = 264
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 600 KKQHGFLPIVNFSWSTFGSLTNSLIFIM 517
K+Q G P++ FSW FG+ T F++
Sbjct: 157 KEQRGSPPMMAFSWWLFGNRTTMTCFVI 184
>08_01_0273 -
2203828-2204124,2204812-2205072,2205161-2205296,
2205438-2205656,2206130-2206323,2206339-2206505,
2206862-2207132,2207740-2207784
Length = 529
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -3
Query: 340 LRSSGE*ILSKAIVFTRSHLRVM*RNVSDQSFSAL 236
LR GE IL AIVFTR++L+ + ++D+ SAL
Sbjct: 139 LRIHGEEILDDAIVFTRNYLQSV-SPMADEVCSAL 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,850,103
Number of Sequences: 37544
Number of extensions: 333884
Number of successful extensions: 653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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