Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021177
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)       56   3e-08
SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)            31   1.0  
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)               29   3.1  
SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)                     29   5.5  
SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)
          Length = 649

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 22/52 (42%), Positives = 35/52 (67%)
 Frame = +1

Query: 589 VLFLPTHRSYADFCLMTYLCCHYDIDFPAVAAGMDFYSMAIVGRRMRETGRF 744
           V+ +P+HRSY DF L++++C   D+  P +AA  DF +M +V R  R++G F
Sbjct: 125 VVLVPSHRSYMDFLLVSFICFSVDLPLPFIAAAQDFMNMRVVRRLFRKSGAF 176


>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
          Length = 520

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +3

Query: 288 DLVKTMALDKIYSPEDLKDFVAKSVYLDNFIDAEST----RTGVSKTELHKEVLN-YLEE 452
           D+    A D+   P++L+D +  S  L+N I++  T    R     TEL +EV N  L +
Sbjct: 30  DIDANAARDQALEPQELRDTITDSTELENAIESLHTKFSKRMSFKLTELQEEVGNDLLTD 89

Query: 453 MGLDKK 470
            GL ++
Sbjct: 90  SGLSEE 95


>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
          Length = 167

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 685 RQQQQESQYRNDNTDRS*DKSLHNCDVLEET 593
           ++ + ++Q R D+   S DK+L NCD ++E+
Sbjct: 70  KRNRDQAQNRRDHLRESPDKTLENCDHIQES 100


>SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)
          Length = 345

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 363 YLDNFIDAESTRTGVSKTELHKEVLNYLEEMGLDKKLHVIRWMGVFFL 506
           Y+  FI   ST          K VL+Y+    +D+KL+V RW G + L
Sbjct: 187 YISEFIGNTSTNKLDVHCTADKAVLSYIV---MDRKLNVCRWQGYWTL 231


>SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = +3

Query: 330 EDLKDFVAKSVYLDNFIDAESTRTGVSKTE-----LHKEVLNYLEE 452
           E  + + A    L+N +D+ + +T  +KT      L+KEVLNYL+E
Sbjct: 297 EAWEPYKAARTALNNTLDSNNIKTLATKTNAKVQHLNKEVLNYLKE 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,444,223
Number of Sequences: 59808
Number of extensions: 412369
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)