Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021177
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO...    30   2.0  
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO...    30   2.0  
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO...    30   2.0  
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains...    30   2.0  
At2g39810.1 68415.m04890 expressed protein                             28   7.9  
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera...    28   7.9  

>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
           identical to pseudo-response regulator 2 GI:7576356 from
           [Arabidopsis thaliana]
          Length = 487

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 297 KTMALDKIYSPEDLKDFVAKSVYLDNFIDAESTRTGVSKT-ELHKEVLNYLEEMGLDKKL 473
           KT ++D I+  ED    + KS  + N    +++R  V  T ELHK+ +  +E++G+D+ +
Sbjct: 264 KTDSVD-IHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPELHKKFVQAVEQLGVDQAI 322

Query: 474 --HVIRWMGVFFLKFHS 518
              ++  M V  L  H+
Sbjct: 323 PSRILELMKVGTLTRHN 339


>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
           identical to pseudo-response regulator 2 GI:7576356 from
           [Arabidopsis thaliana]
          Length = 535

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 297 KTMALDKIYSPEDLKDFVAKSVYLDNFIDAESTRTGVSKT-ELHKEVLNYLEEMGLDKKL 473
           KT ++D I+  ED    + KS  + N    +++R  V  T ELHK+ +  +E++G+D+ +
Sbjct: 264 KTDSVD-IHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPELHKKFVQAVEQLGVDQAI 322

Query: 474 --HVIRWMGVFFLKFHS 518
              ++  M V  L  H+
Sbjct: 323 PSRILELMKVGTLTRHN 339


>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
           identical to pseudo-response regulator 2 GI:7576356 from
           [Arabidopsis thaliana]
          Length = 535

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 297 KTMALDKIYSPEDLKDFVAKSVYLDNFIDAESTRTGVSKT-ELHKEVLNYLEEMGLDKKL 473
           KT ++D I+  ED    + KS  + N    +++R  V  T ELHK+ +  +E++G+D+ +
Sbjct: 264 KTDSVD-IHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPELHKKFVQAVEQLGVDQAI 322

Query: 474 --HVIRWMGVFFLKFHS 518
              ++  M V  L  H+
Sbjct: 323 PSRILELMKVGTLTRHN 339


>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 494

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 300 TMALDKIYSPEDLKDFVAKSVYLDNFIDAESTRTGVSKTELHKEVLNYLEE 452
           TM +D+I   +  + F A  VYL N I  E+ R  V K    K    Y+E+
Sbjct: 61  TMVIDEIIGFKRNQVFDAAEVYLRNKIGPETARLRVGKLPKQKHFTIYIEK 111


>At2g39810.1 68415.m04890 expressed protein
          Length = 865

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -1

Query: 684 GSNSRKVNIVMTTQ--IGHKTKVCITAMCWKKQHGFLPIVNFSWSTFGSLTNSLI 526
           GS S ++  V T +  IG KTK  +  M W  +HGFL  V   +S F S  N+L+
Sbjct: 241 GSVSPQLQDVQTLRENIG-KTKQHLDIMVWCIRHGFLDDVRSRYSNFTS-WNALV 293


>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein similar to UDP-glucose
           glucosyltransferase GI:453245 from [Manihot esculenta]
          Length = 479

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 219 HFLTHFEFSTLLTNLIHRVDT 157
           H L H EF+  L NL HR+ T
Sbjct: 17  HILVHIEFAKRLINLDHRIHT 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,038
Number of Sequences: 28952
Number of extensions: 291967
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)