Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021176
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    45   1e-05
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      32   0.075
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.9  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    26   6.5  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.6  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +1

Query: 250 ILAACNKVIPAFEMVMRARSNVYHLECFACQQCN----HRFCVGDRFYLCENKILCEYDY 417
           I A+C +VI      +RA  N+YHLECF C  CN     +F   D   L +   LCE DY
Sbjct: 115 ICASCGQVISG--QYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDY 172

Query: 418 EERL 429
             RL
Sbjct: 173 FRRL 176



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 56  QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTL---YTRANLILCKRDY 226
           +ICA C +VI+ +Y ++AL  ++H +C +C  C+  +      +        + LC+ DY
Sbjct: 114 KICASCGQVISGQY-VRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDY 172

Query: 227 LR 232
            R
Sbjct: 173 FR 174



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 250 ILAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 417
           + A+C   +  + +   A +  +H+E F C  C   F   D +Y  E K+ C Y Y
Sbjct: 179 LCASCGMALRGYYIT--ALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHY 232


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 292 VMRARSNVYHLECFACQQCNHRF-CVGDRFYLCENKILCEYDYEER 426
           ++ A     H +CF C  C+     VG  FY  E K  C  DY E+
Sbjct: 270 IISASGKKLHPQCFKCDTCSQNLEHVG--FYYREGKFYCHLDYHEQ 313



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 62  CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGH 181
           C  C K I     +K  D  +H  C  CG C+  LG+ G+
Sbjct: 378 CKKCRKPILG-ISVKGSDGEYHSQCWTCGACNALLGDEGY 416



 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 262 CNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDR-FYLCENKILC 405
           C K  P   + ++     YH +C+ C  CN    +GD  +++ EN  +C
Sbjct: 381 CRK--PILGISVKGSDGEYHSQCWTCGACN--ALLGDEGYFMIENTPIC 425


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  ICAGCSKVITERYL-LKALDQLWHEDCLKCGCCD 157
           +C  C +    R   +     +WH+DC  C  CD
Sbjct: 18  VCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCD 51


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 122 WHEDCLKCGCCDCRL 166
           WH DC KC  C+ +L
Sbjct: 44  WHSDCFKCVNCNKKL 58


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 170 PRVGSRSSRT-SNSPRATVDPKPSRDTAR*SLCCTQRISVVEEDSVQMLQSLP 15
           P+ G R  R  SN P+ T + KP+ +TA      +   SV+ E+S  ++ +LP
Sbjct: 17  PKGGIRKRRARSNKPKPTKNAKPAVNTA------SALKSVISEESKIIVSNLP 63


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 19  NDCNICTESSSTTDMRWVQQSDHRAVSLEGFGS 117
           ND N  T SS+ + +  ++Q   + ++L+GF S
Sbjct: 120 NDLNQMTSSSNLSTVTPIKQDHQKPMNLQGFPS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,697
Number of Sequences: 5004
Number of extensions: 66751
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)