Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021176
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 39 0.003
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 36 0.021
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 36 0.028
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 35 0.065
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 34 0.087
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 33 0.20
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 32 0.46
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 31 0.61
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 31 0.81
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 31 1.1
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 30 1.9
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 30 1.9
At3g61400.1 68416.m06875 2-oxoglutarate-dependent dioxygenase, p... 29 2.5
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 29 2.5
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 3.3
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 29 3.3
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 29 4.3
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 28 5.7
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 5.7
At2g19390.1 68415.m02262 expressed protein 28 7.5
At5g66740.1 68418.m08413 hypothetical protein contains Pfam prof... 27 9.9
At4g24110.1 68417.m03461 expressed protein 27 9.9
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 27 9.9
At2g27090.1 68415.m03255 expressed protein contains Pfam domains... 27 9.9
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 56 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGE 172
+ICAGC+ I L L+ LWH +C +C C + E
Sbjct: 170 RICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISE 208
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 41 NPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCD 157
NPP +C GC+ + + L LWH C C CD
Sbjct: 341 NPPL-SMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCD 378
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 41 NPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCC 154
NPP P +C GC+ + + L LWH C C C
Sbjct: 280 NPP-PSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRAC 316
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 34.7 bits (76), Expect = 0.065
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 56 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 235
Q C C K + LL A +H+ C KC C RL ++ + ++ CK + +L
Sbjct: 8 QKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYS--SMEGVLYCKPHFEQL 65
Query: 236 FGNTG 250
F +G
Sbjct: 66 FKESG 70
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +2
Query: 62 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 241
CA CSK + + Q +H+ C KC C + + ++ CK + +LF
Sbjct: 108 CATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYA--ALEGILYCKHHFAQLFK 165
Query: 242 NTGYLPLVIK 271
G +IK
Sbjct: 166 EKGSYNHLIK 175
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 259 ACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 423
AC K + A E+ + A YH CF C C R + + E + C+ +E+
Sbjct: 12 ACEKTVYAVEL-LSADGVGYHKSCFKCTHCKSRLQLSS-YSSMEGVLYCKPHFEQ 64
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 56 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 235
Q C C K + LL A +H+ C KC C RL ++ + ++ C+ + +L
Sbjct: 8 QKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYS--SMEGVVYCRPHFEQL 65
Query: 236 FGNTG 250
F +G
Sbjct: 66 FKESG 70
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +2
Query: 62 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 241
CA C+K + + Q +H+ C KC C + + ++ CK + +LF
Sbjct: 109 CATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYA--ALEGILYCKHHFAQLFK 166
Query: 242 NTGYLPLVIK 271
G +IK
Sbjct: 167 EKGSYNHLIK 176
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 259 ACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 423
AC K + E+ + A YH CF C C R + + + E + C +E+
Sbjct: 12 ACEKTVYPVEL-LSADGISYHKACFKCSHCKSRLQLSN-YSSMEGVVYCRPHFEQ 64
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 280 AFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYL 384
A + +AR V H++C C +R+C+G R +L
Sbjct: 444 ASKFCFQARKIVKHIDCCKVPNCKYRYCLGTRMWL 478
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 59 ICAGCSKVITERYLLKALDQLWHEDCLKCGCCD 157
IC GC I + AL WH +C C CD
Sbjct: 200 ICDGCKSAIEYGRSVHALGVNWHPECFCCRYCD 232
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = +2
Query: 62 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 241
C GC K + + L+H+ C KC C + + + + CK +++L
Sbjct: 110 CVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAH--EGKLYCKHHHIQLIK 167
Query: 242 NTGYL 256
G L
Sbjct: 168 EKGNL 172
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 259 ACNKVIPAFEMVMRARSNVYHLECFACQQC 348
AC+K + + + A + VYH CF C C
Sbjct: 12 ACDKTVYLVDK-LTADNRVYHKACFRCHHC 40
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 62 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLIL-CKRDYLRLF 238
CA C K + ++ + +H+ C +C C L H+ Y + +L C+ + +LF
Sbjct: 104 CAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTL---THSSYASLDSVLYCRHHFNQLF 160
Query: 239 GNTG 250
G
Sbjct: 161 MEKG 164
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +1
Query: 259 ACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 423
AC+K + ++ + N YH CF C C + + + + + C+ +E+
Sbjct: 12 ACDKTVYVMDL-LTLEGNTYHKSCFRCTHCKGTLVISN-YSSMDGVLYCKPHFEQ 64
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +1
Query: 448 YNPPPLAHLKRQTTHLPPPPRAVRWAAS*TGQVVPAP--FAAPP 573
Y+PPP H H PPPP V P P ++ PP
Sbjct: 580 YSPPPPVHSPPPPVHSPPPPAPVHSPPPPVHSPPPPPPVYSPPP 623
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +1
Query: 259 ACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 423
AC+K + ++ M YH CF C CN + + + + + C+ +E+
Sbjct: 13 ACDKTVYVMDL-MTLEGMPYHKSCFRCSHCNGTLVICN-YSSMDGVLYCKTHFEQ 65
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 62 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLIL-CKRDYLRLF 238
CA C K + + + +H+ C +C C L H+ Y + +L CK + +LF
Sbjct: 107 CAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPL---THSSYAALDGVLYCKVHFSQLF 163
Query: 239 GNTG 250
G
Sbjct: 164 LEKG 167
>At3g61400.1 68416.m06875 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967);
1-aminocyclopropane-1-carboxylate oxidase homolog -
Arabidopsis thaliana, PIR:S59548
Length = 370
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 459 TAGTSQATDYAFASTSESGAMGGLMNGSGRSGSVCCPPAPQA-PGPLGDQLRL 614
T G S+ TD++F + G +GGL + + PP P A LGD L+L
Sbjct: 236 TLGLSKHTDFSFLTIVLQGNLGGLQVLHDKQYWIDIPPVPGALVVNLGDLLQL 288
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 56 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGE 172
+IC GC+ I L + +H +C +C C + E
Sbjct: 160 RICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITE 198
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 408 VRLRREAGFRKHGVQS-TTA-GTSQATDYAFASTSESGAMGGLMNGSGRSGSVCCPPAPQ 581
V + +E HGV + TTA +S +T G+ GG + G+ S SV PP
Sbjct: 862 VIIAKERSTSNHGVSALTTAESSSSSTTGGTLMGVMRGSFGGTLGGASSSASVQMPPILP 921
Query: 582 APGP 593
+ P
Sbjct: 922 SASP 925
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 370 DRFYLCENKILCEYDYEERLVFANMAYNPPPLAHLKRQTT 489
+ F N I Y++ RL A PPP HL+R+TT
Sbjct: 22 NNFIPTTNTINHHYNHRRRLTTAAGQPPPPPANHLRRRTT 61
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 518 DGRPHERVRSFRLRLLPPRTSSPWASRR 601
DG+ H RSFR R +P PW R
Sbjct: 1467 DGKVHNIARSFRDRWIPKHFRKPWRINR 1494
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 454 PPPLAHLKRQTTHLPPPPRAVRWAAS*TGQVVPAPFAAPPHL 579
PPP ++R+ PPPP A+R +V+P P PP L
Sbjct: 42 PPPPPPMRRRAPLPPPPPPAMR------RRVLPRPPPPPPPL 77
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +1
Query: 448 YNPPPLAHLKRQTTHLPPPPRAVRWAAS*TGQVVPAPFA-APPHLKPLGLSAT 603
++PPP H H PPPP + P P PP P+ + T
Sbjct: 786 HSPPPPVHSPPPPVHSPPPPSPIYSPPPPVFSPPPKPVTPLPPATSPMANAPT 838
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +1
Query: 448 YNPPPLAHLKRQTTHLPPPPRAVRWAAS*TGQVVPAPFAAPPHLKPL 588
++PPP H H PPPP V P P +PP P+
Sbjct: 704 HSPPPPVHSPPPPVHSPPPP--VHSPPPPVQSPPPPPVFSPPPPAPI 748
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = +2
Query: 551 RLRLLPPRTSSP----WASRRPAEITAYETRPTRMP--SIKTEQSY*TKVSD 688
R R+ R+SSP WAS+RP +I+ R +P S + E Y +SD
Sbjct: 443 RKRMTSNRSSSPPVTQWASQRPQKISRIARRTNLVPIVSSQDEVPYSDNISD 494
>At5g66740.1 68418.m08413 hypothetical protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 247
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 224 NLSCRELGWRAC-IECGQPPRVGSRSSRTSNSPRATVDPKPSR 99
+L C EL C + CG R+ R S +P +T P+P R
Sbjct: 41 DLWCLELVVSGCKVICGSNGRLSWRHSSNQQTPASTGTPRPLR 83
>At4g24110.1 68417.m03461 expressed protein
Length = 250
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 136 FEVRLLRLPTRGGWPHSIHARQPNSLQERLFEV 234
F VR LPTRG P S+ P + E FE+
Sbjct: 21 FFVRFTGLPTRGFLPDSLTLLYPPRINEAAFEL 53
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +1
Query: 454 PPPLAHLKRQTTHLPPPPRAVRWAAS*TGQVVPAPFAAPPHLKP 585
PPP H PPPP +++ P P + PP P
Sbjct: 538 PPPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSP 581
>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 743
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 436 ANMAYNPPPLAHLKRQTTHLPPPP 507
++++Y+PPP +H T PP P
Sbjct: 86 SHLSYSPPPASHSHHDTYSPPPSP 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,866
Number of Sequences: 28952
Number of extensions: 401398
Number of successful extensions: 1656
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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