Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021175
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    40   3e-05
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
 Frame = +2

Query: 410 DARQIRKPLRYNNLDKL*Y*LPRN*FVQNISKTSYIDLSGNVI--KKTGNGLFAQFGRLI 583
           D R+I   L YN L  L    P+  F + + +   ++L+GN +   +     F    RLI
Sbjct: 286 DLREIH--LAYNGLRDL----PKGIFTR-LEQLLVLNLAGNRLGSDRVDETTFLGLIRLI 338

Query: 584 YLNISRNELEDIPRSTFADLENLEVLDLSHNRLRFIPFQVFEPM 715
            LN+S N L  I    F DL  L++LDL +N +  I    F P+
Sbjct: 339 VLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPL 382



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +2

Query: 521 LSGNVIKKTGNGLFAQFGRLIYLNISRNELEDIPRSTFADLENLEVLDLSHNRLRFIPFQ 700
           L GNV+++  N +F     +  L ++ + +E I   TF  L NL++L L  NR+R +   
Sbjct: 801 LDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGF 860

Query: 701 VFE 709
            FE
Sbjct: 861 EFE 863



 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +2

Query: 524 SGNVIKKTGNGLFAQFGRLIYLNISRNELEDIPRSTFADLENLEVLDLSHNRL 682
           S N +     GLFA    L  ++++ N L D+P+  F  LE L VL+L+ NRL
Sbjct: 269 SYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321



 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +2

Query: 515 IDLSGNVIKKTGNGLFAQFGRLIYLNISRNELEDIPRSTFADLENLEVLDLSHNRLRFIP 694
           ++LS N++      +F     L  L++  N ++ I  + F  L NL  L+LS N+LR + 
Sbjct: 340 LNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVG 399

Query: 695 FQVF 706
            Q+F
Sbjct: 400 AQLF 403



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +2

Query: 515 IDLSGNVIKKTGNGLFAQFGRLIYLNISRNELEDIPRSTFADLENLEVLDLSHNRL 682
           + LSGN I       F     L  L++S NEL  +P     DL  L+ LDL  NR+
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVP-DALRDLALLKTLDLGENRI 466



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 491 QNISKTSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNELEDIPRSTFADLENLEVLDLS 670
           +N+ + + + L GN I     G+      L  LN++RN+++ + R  F     LE + L 
Sbjct: 475 RNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLD 534

Query: 671 HNRL 682
            N L
Sbjct: 535 GNFL 538



 Score = 30.7 bits (66), Expect = 0.014
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 497  ISKTSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNELEDIPRSTFADLENLEVLDLSHN 676
            ++    + L  N I++     F +   L  L +  N +  I   TF  L +LE+L LS N
Sbjct: 841  LNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGN 900

Query: 677  RLRFIP 694
            RL   P
Sbjct: 901  RLVTFP 906



 Score = 30.3 bits (65), Expect = 0.019
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 587 LNISRNELEDIPRSTFADLENLEVLDLSHNRLRFI 691
           L I  + ++ +P ++   L+NL+ L+L+ NRLR I
Sbjct: 152 LEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDI 186



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 515 IDLSGNVIKKTGNGLFAQFGRLIYLNISRNELE 613
           I L GN +    NG+F     L+ LN+S N +E
Sbjct: 531 IRLDGNFLSDI-NGVFTSIASLLLLNLSENHIE 562


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 345 TCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEI 482
           +C  EH   +N S +  K  K    +   LLD  I   S+I  L++
Sbjct: 424 SCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDV 469


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 345 TCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEI 482
           +C  EH   +N S +  K  K    +   LLD  I   S+I  L++
Sbjct: 130 SCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDV 175


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 581 IYLNISRNELEDIPRSTFADLENLEVLDLSHNRLRFIPFQV 703
           I   +S    +DIP  T  + EN + LDL    +  +P Q+
Sbjct: 304 IKTELSTGMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQL 344


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 535 YQEDWKRPVRAVRSTDLLEHFQERTRG 615
           Y+    RP   +RSTD++   QE   G
Sbjct: 517 YEPSACRPRHEIRSTDVIPGTQEHVCG 543


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -1

Query: 187 STTDAPKTLILTRTLRNFTFLNETPLHIHDSH 92
           STT  P T  + +  +     N T   IH  H
Sbjct: 82  STTIVPTTQEINKPFKRLELFNITTTTIHSIH 113


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 155 HSYVTKLHLFK*NSIAHSRFTRSTSCTNNFKLNI 54
           H   T L   +  SIA S F   T C   F + +
Sbjct: 156 HGKTTLLDALRNTSIAKSEFGGITQCIGAFDVTL 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,910
Number of Sequences: 438
Number of extensions: 3696
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)