Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021174X
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 0.81
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 0.81
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 3.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 3.3
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 4.3
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 4.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 4.3
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 5.7
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 24 7.6
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 24 10.0
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 24 10.0
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 0.81
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +1
Query: 49 QHHPPFISPRRHNGSPSGNRYQQFPSQASTLPISGKFQAHDMNNQQSQLVPGFSA*HGFH 228
+HH SPR GS S + + S S P+ + + + +S+ P + H +
Sbjct: 114 RHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSR-HPSSRSRHRYD 172
Query: 229 QFSR----HSRHPR 258
+SR SRH R
Sbjct: 173 DYSRSPPYSSRHSR 186
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 0.81
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 37 WLSRQHHPPFISPRRH-NGSPS 99
W +QH F+SP +H +G+PS
Sbjct: 449 WCLKQHDSSFVSPNKHLDGNPS 470
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 2 KSQLVPGFCA*HGFHANTIHRLYHRDAITAPLVETAIS 115
KS+L+P C H F +N + Y T P ET S
Sbjct: 648 KSKLIPN-CG-HAFCSNCMEPFYEHKTSTCPQCETPFS 683
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 3.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 166 HDMNNQQSQLVPGFSA*HGFHQFSRHS 246
H+MNN +S LVP A + S HS
Sbjct: 706 HNMNNDRSFLVPSRDARNSLTSLSLHS 732
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 4.3
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +2
Query: 50 NTIHRLYHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT*TTNKVSLSLASPLSMAFT 229
+T++ H+D A + + R K QL+ +S M+ L+ A+P+ A
Sbjct: 160 DTLYVGLHKDQKLAMVGTFIFRSVRGKFQLFGATYSSACMSWFPLNAPLAFATPVFSAID 219
Query: 230 NLVDTLAIPE 259
N + + I E
Sbjct: 220 NALPAMQISE 229
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 282 HYGSRYGVSGMARVSTKLVKAMLSGEARDKLTLLVVHVMSLEFT 151
H + +SG + K V A+LSGE +D ++ ++++ F+
Sbjct: 322 HIEAFINISGSLIGAPKTVAALLSGEMKDTGIVITLNILEKFFS 365
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 250 HPRDAITAPVVETAISNFRHK 312
+P A P+ E +S+FRHK
Sbjct: 1096 NPERAFILPIFEVLLSDFRHK 1116
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 24.6 bits (51), Expect = 5.7
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +1
Query: 22 LLRLAWLSRQHHPPFISPRRHNGSPSGNRYQQFPSQASTLPISGKFQAHDMNNQQSQLV 198
++R + +R+ PP ++ + SPS + Q+ + +ST ++ + NQQ +++
Sbjct: 382 VMRYSANAREILPPPLNENSGSQSPSHSLLQKSKNTSSTKALTSHLEQLQQENQQLRML 440
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 70 SPRRHNGSPSGNRYQQFPSQASTLPISGKFQAH-DMNNQQSQLVP 201
SP+ + G + PS+ S+ P +G F + D N + L P
Sbjct: 256 SPKHADTDVLGLDFDMTPSEPSSFPENGGFPSFVDANTHEQTLFP 300
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 56 IHRLYHRDAITAPLVETAISNF 121
+H LY+ D++ APL+ + F
Sbjct: 333 LHHLYYPDSLPAPLLLNRVCEF 354
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 121 PSQASTLPISGKFQAHDMNNQQSQLVPGFSA*HGFHQFSRHSRHP 255
P+Q+ +L +Q N + +P FS+ H Q H P
Sbjct: 169 PTQSPSLNQMQDYQNLQQNGSSNTTIPSFSSQHDLSQGLTHQPVP 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,160
Number of Sequences: 5004
Number of extensions: 34432
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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