Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021174X
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 30 0.59
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140 30 0.77
03_06_0381 - 33524696-33524743,33524833-33524910,33525020-335252... 28 2.4
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996... 27 4.1
11_06_0670 - 26091856-26092212 27 4.1
05_03_0159 + 9040426-9040550,9042491-9042569,9042710-9042769,904... 27 5.5
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 27 7.2
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 27 7.2
03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325 27 7.2
02_01_0424 - 3097245-3099377 27 7.2
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 26 9.5
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 26 9.5
>03_06_0353 -
33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 30.3 bits (65), Expect = 0.59
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 41 FHANTIHRLYHRDAITAPLVETAISNFRHK 130
+H N H L HR A+ AP A + +H+
Sbjct: 95 YHQNPTHNLQHRAAVPAPAAPAAAPSIQHR 124
>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
Length = 695
Score = 29.9 bits (64), Expect = 0.77
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Frame = +1
Query: 4 KSACPWLLRL-AWLSRQHHPPFISPRRHNGSPSGNRYQQFP--SQASTLPI-SGKFQAHD 171
K CPWL+ L + + H P F PR+ P Y + P Q T P+ AHD
Sbjct: 372 KRVCPWLVELVSSMPNLHLPSFSPPRK---KPRNPPYAELPLEGQIFTGPVFPPNPMAHD 428
Query: 172 MNNQQS---QLVPGFSA*HGFHQFSRHSRHPRDAITAPVVETAISNFRHKLQLY 324
++ P SA Q +RH++ +P E I N + L LY
Sbjct: 429 HHHHHGFPFLPFPDSSAQPAGIQGARHAQ-----FASPFPEFHIGNLQPNLMLY 477
>03_06_0381 -
33524696-33524743,33524833-33524910,33525020-33525293,
33525385-33525617
Length = 210
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 28 RLAWLSRQHHPPFISPRRHNGSPSGNRYQQFPSQASTLPISG 153
R + L+R+ PF+S RH+ S S + + + ++ S P G
Sbjct: 71 RPSTLNRRKTEPFVSDNRHSMSLSPEKDRYYSTRGSPFPFEG 112
>12_01_1019 -
10398880-10399314,10399401-10399481,10399560-10399652,
10399784-10399999,10403837-10403935,10404244-10404867,
10404946-10405033,10405167-10405430,10406437-10406504
Length = 655
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 46 RQHHPPFISPRRHNGSPSGNRYQQFPSQASTLPISGKFQAHDMNNQQSQL 195
R H P P R S S N YQQ + ++ + Q + + QQ+QL
Sbjct: 549 RGHGP---KPNRRASSTSANTYQQMEEELASTKQTAAVQQNQLAVQQNQL 595
>11_06_0670 - 26091856-26092212
Length = 118
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 327 WVKLKLVTEIADGGFHYGSRYGVSGMARVSTKLVKAMLSGEA 202
WV ++T+I + GF Y +G + ++ TK+++ L EA
Sbjct: 16 WVVSPIITKILNKGFSYLGFHGSEKLKQLQTKVLQLELVLEA 57
>05_03_0159 +
9040426-9040550,9042491-9042569,9042710-9042769,
9043050-9043121
Length = 111
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 4 KSACPWLLRLAWLSRQHHPPFISPRRHNGSPSG 102
++ PWL W R+ H P PR+ + +G
Sbjct: 4 RTPAPWLALGTWQERKEHEPRERPRKEHEHSAG 36
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 327 WVKLKLVTEIADGGFHYGSRYGVSGMARVSTKLVKAMLSGEARDKLTLLVV 175
W K+VT++ + GF+ Y +V + + +SGE L L++V
Sbjct: 596 WRLTKVVTQLKENGFNTALYYDNQKFRKVFDIVPTSAISGEGIPDLLLMLV 646
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 109 YQQFPSQASTLPISGKFQAHDMNNQQSQLVPGFSA*HGFHQFSRHSRHPRDAITAPVV-E 285
YQ+F + +PIS KF H +++ + ++ ++ S HP +V E
Sbjct: 261 YQKFTNADDVIPISAKF-GHGVDDIKEWILSKLPLGPAYYPKDIASEHPERFFVGEIVRE 319
Query: 286 TAISNFRHKLQLYPYQVN 339
+R ++ Y QVN
Sbjct: 320 KIFLQYRQEIP-YACQVN 336
>03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325
Length = 321
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 396 RRKSQGQADFVGCLCHELG-IYLIWVKLKLVTEIADGGFHYGSRYGVSGMARVSTK 232
R+ G D+ LG + L+WV LV EIA GF G + +AR++T+
Sbjct: 84 RKTPGGSHDWALYTATVLGFLLLLWVDSGLVPEIAARGF--GPKLSPEAVARLATE 137
>02_01_0424 - 3097245-3099377
Length = 710
Score = 26.6 bits (56), Expect = 7.2
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +2
Query: 53 TIHRLYHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT*TTNKVSLSLASPLSMAFTN 232
++H Y+ A T P SN + LQL + + +L TN SL+ S +FTN
Sbjct: 346 SLHVSYNSFAGTIPESVYTCSNL-NALQLSFNKFHGQLSFRITNLKSLTYLSLAENSFTN 404
Query: 233 LVDTLAI 253
+ +TL I
Sbjct: 405 ISNTLQI 411
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 181 GCSCHELGIYLIWVKLKL 128
G +CHE GI ++W K L
Sbjct: 806 GSNCHETGITMLWKKYPL 823
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 49 QHHPPFISPRRHNGSPSGNRYQQFPSQASTLPISGKFQAHDMNNQQ 186
+ PP +SP R+NGS G R+ A P+ G + N ++
Sbjct: 650 KERPPLLSPSRNNGS-DGRRFLDLNEVA---PVGGFDETQSRNGER 691
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,266
Number of Sequences: 37544
Number of extensions: 251424
Number of successful extensions: 665
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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