Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021174X
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.1  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)                   26   9.8  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 25/88 (28%), Positives = 35/88 (39%)
 Frame = +1

Query: 73   PRRHNGSPSGNRYQQFPSQASTLPISGKFQAHDMNNQQSQLVPGFSA*HGFHQFSRHSRH 252
            PR      SG+      S    +P SGK Q  D  N+Q    PGF        FS  S+ 
Sbjct: 1198 PRGEGEEKSGSSGSSMESSPQGMPASGKTQITDNPNKQ----PGFPG-----GFSSASQF 1248

Query: 253  PRDAITAPVVETAISNFRHKLQLYPYQV 336
            P    ++P   T  ++  +K Q  P  +
Sbjct: 1249 PYSIASSPWQNTEPTDSLNKTQANPSSI 1276


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 275 P*WKPPSAISVTSFNFT 325
           P W+PP A+ V +F+FT
Sbjct: 52  PDWQPPFAVDVENFHFT 68


>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 38  GFHANTIHRLYHRDAITAPLVETAISNFRHKLQL 139
           G H    H +YH   +TA  + + +S   H+L L
Sbjct: 645 GLHRKISHEVYHYSVMTADWLISEVSIIYHRLTL 678


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 19  WLLRLAWLSRQHHPPFISPRRHNGSPSGNRYQQFPSQASTLPI 147
           WL   A  S      FI      G+    R+ QFP Q S +P+
Sbjct: 230 WLSTDATPSNSRRIAFIGSEHVRGTSKSRRFSQFPEQTS-MPV 271


>SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)
          Length = 348

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 43  SRQHHPPFISPRRHNGSPSGNRYQQFPSQASTLPISGKFQA 165
           SR   PP   P  HNGSP  +    + +   T  +  +F++
Sbjct: 143 SRTKDPPSGGPPHHNGSPRAHPITVYDTHHRTTVLRQRFKS 183


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 46   RQHHPPFISPRRHNGSPSGNRYQQF--PSQASTLPISGKFQAHDMNNQQSQ 192
            +Q   P I      G P+  + QQ   P Q S   I+ + Q H+M  QQ Q
Sbjct: 1084 QQKPSPTIQQPPQQGQPAQLQQQQLQKPQQQSQPQIAQQQQLHEMQRQQIQ 1134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,692
Number of Sequences: 59808
Number of extensions: 271675
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)