Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021174X
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    28   2.8  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    28   2.8  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    28   2.8  
U23174-1|AAM97991.1|  161|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform a
           protein.
          Length = 4488

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 103 NRYQQFPSQASTLPISGKFQAHDMNNQQSQLVPGFSA*HGFHQFSRHSRHPRD 261
           N Y+Q   Q   +     +Q     +QQ Q  P       FH F+++ +H R+
Sbjct: 181 NLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQRFHHFNQYQQHIRE 233


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform d
           protein.
          Length = 4369

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 103 NRYQQFPSQASTLPISGKFQAHDMNNQQSQLVPGFSA*HGFHQFSRHSRHPRD 261
           N Y+Q   Q   +     +Q     +QQ Q  P       FH F+++ +H R+
Sbjct: 181 NLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQRFHHFNQYQQHIRE 233


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform c
           protein.
          Length = 4447

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 103 NRYQQFPSQASTLPISGKFQAHDMNNQQSQLVPGFSA*HGFHQFSRHSRHPRD 261
           N Y+Q   Q   +     +Q     +QQ Q  P       FH F+++ +H R+
Sbjct: 181 NLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQRFHHFNQYQQHIRE 233


>U23174-1|AAM97991.1|  161|Caenorhabditis elegans Hypothetical
           protein R10H1.1 protein.
          Length = 161

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 28  RLAWLSRQHHPPFISPRRHNGSPSGNRYQQFPSQASTLPISGKFQA 165
           R+AWL +Q      +P RH+G      ++  P Q+S    S   Q+
Sbjct: 114 RMAWLLQQESSATPAPSRHSGDLIS--FEDQPQQSSNTTTSSSCQS 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,438,828
Number of Sequences: 27780
Number of extensions: 194927
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)