Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021174X
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.56 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   0.97 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +1

Query: 58  PPFISPRRHNGSPSGNRYQQFPSQASTLPISGKFQAHDMNNQQSQLVP----GFSA*HGF 225
           PP  S     G P G    Q PSQ    P SG  Q   +  QQ  L P     F   H  
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQL-LQQHILSPTQLQSFMQQHSL 97

Query: 226 HQFSRHSRHPRDA 264
           +   +  +H +D+
Sbjct: 98  YLQQQQQQHHQDS 110


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 390 KSQGQADFVGCLCHELGIYLIWVK 319
           K+ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 208 RSQGQADFVGCSCHELGIYLIWVK 137
           ++ G  + VGC C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 267 NGSRSGNRHQQFPSQASTLPISGKFQAHDINNQQSQ 374
           NG +S   HQQ     ST P   + QA     QQ Q
Sbjct: 803 NGDQSQPPHQQLHHHQSTHP-QAQAQAQPQQQQQQQ 837


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 85  NGSPSGNRYQQFPSQASTLPISGKFQAHDMNN 180
           +G+  GN YQ++  Q S    S  F   D  N
Sbjct: 24  SGAIKGNDYQRYHQQISGDRFSKDFYRQDTKN 55


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  HGFHANTIHRLYHRDAITAPLVETAISNFR 124
           HG+   T+HRL  R  + + +    I++ R
Sbjct: 205 HGYRCRTMHRL-TRQVVVSSVANVRIADHR 233


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  HGFHANTIHRLYHRDAITAPLVETAISNFR 124
           HG+   T+HRL  R  + + +    I++ R
Sbjct: 205 HGYRCRTMHRL-TRQVVVSSVANVRIADHR 233


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 285 FHYGSRYGVSG 253
           F+ GS YGVSG
Sbjct: 238 FNSGSTYGVSG 248


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 395 EEKARDKLTLLVVYVMSLEFT 333
           EE  RD++ LL     SLE T
Sbjct: 287 EENKRDEIVLLTEAYSSLENT 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,279
Number of Sequences: 438
Number of extensions: 2266
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)