Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021174X
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67035.1 68414.m07623 expressed protein ; expression supporte...    29   1.5  
At5g57610.1 68418.m07197 protein kinase family protein similar t...    28   2.6  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    28   2.6  
At1g75360.1 68414.m08753 hypothetical protein                          28   2.6  
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ...    27   4.6  

>At1g67035.1 68414.m07623 expressed protein ; expression supported
           by MPSS
          Length = 229

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 321 KLKLVTEIADGGFHYGSRYGVSGMARVSTKLVK 223
           KLKL+ +  D GF  GSRYG     R S   +K
Sbjct: 26  KLKLLVDNGDYGFERGSRYGEYARLRESKLRMK 58



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 139 KLKLVTEIADSGFH*GSRYG 80
           KLKL+ +  D GF  GSRYG
Sbjct: 26  KLKLLVDNGDYGFERGSRYG 45


>At5g57610.1 68418.m07197 protein kinase family protein similar to
           protein kinase [Glycine max] GI:170047, MAP3K delta-1
           protein kinase [Arabidopsis thaliana] GI:2253010;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1054

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +1

Query: 61  PFISPRRHNGSPSGNRYQQFPSQAST----LPISGKFQAHDMNNQQSQLVPGFSA*HGFH 228
           PF SPR H+G      +Q+FPS  S+    +P  G+     ++    + V   ++ H F+
Sbjct: 237 PFYSPR-HHGHHDPRTFQEFPSSPSSARYRMPY-GEIPDKGLDRMPEEYVRPQASHHPFY 294

Query: 229 QFSRH 243
           +   H
Sbjct: 295 EHQAH 299


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 41  FHANTIHRLYHRDAITAPLVETAISNFRHKLQLY 142
           ++  T    YH++ + +PL  T  S+ +H LQ+Y
Sbjct: 16  YYCVTCDERYHKECVESPLEITYPSHPQHSLQIY 49


>At1g75360.1 68414.m08753 hypothetical protein
          Length = 264

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +1

Query: 64  FISPRRHNGSPSGN------RYQQFPSQASTLPISGKFQAHDMNNQQSQLVPGFSA-*HG 222
           F+S   +N S S N       Y Q+ S  ST+  +      D N+   Q+VP F+A    
Sbjct: 85  FLSGESNNESSSSNVETEPDLYDQYTSSFSTVIANASAAKVDDNDSNKQIVPTFNAEVDE 144

Query: 223 FHQFSRHSRHPRDAITAPVVE 285
             +  R SR  +  I  P +E
Sbjct: 145 AVKTKRISRRTKSEICRPAME 165


>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 499

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  YHRDAITAPLVETAISNFRHKLQLY 142
           YH++ + +PL     S+ +H LQLY
Sbjct: 152 YHKECVESPLEINYPSHVKHSLQLY 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,162,459
Number of Sequences: 28952
Number of extensions: 192816
Number of successful extensions: 495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)