Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021173
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.58 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   1.3  
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    27   2.3  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   3.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.1  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   5.4  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    26   5.4  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    26   5.4  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   9.4  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 81  KDNSLKIRDDMEELRRLS--GKFNVSQDETNDQGLEVRVHAVGKGSAQAVIVLR 236
           K   + +R++++EL  +    +  +SQ    DQ L  ++ +VG G  QAV  LR
Sbjct: 643 KTRLMILREELQELDAIKEEAQKQISQSLIADQQLSTQIGSVGMGKKQAVKELR 696


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +3

Query: 3    ITTVFNNSYFLDVHFSIHDQDVFYFVKDNSLKIRDDMEELRRLSGKFNVSQDETNDQGLE 182
            +TT+ + +  ++++F   D+ +  F +      R+   ELR+L G         +   LE
Sbjct: 935  LTTISSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKTELRKLDGVLEARSKRLSQ--LE 992

Query: 183  VRVHAVGKGSAQAV 224
             RV  +G GS  ++
Sbjct: 993  ERVKLLGAGSTSSI 1006


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 263 IKLLKHAHKRAATRAWEREKALVAAGWE---GRGSWTEEEKEELISHGIVDGWAARD 424
           I+ LK+  ++A       + +L +A WE   G+   T+EE+ + +   + +GW +RD
Sbjct: 12  IRYLKNVLRKARKIDDTIQLSLNSAKWEYPEGKVHETQEERCQNVKKKLFEGWLSRD 68


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 63  DVFYFVKDNSLKIRDDMEELRRLSGKFNVSQDETNDQGL 179
           D+F +VKD+ L++ +   +LR LS        E  + G+
Sbjct: 396 DLFEYVKDSILRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 167 VSFVLRHVEFPRQPPQFLHVIPDLK*IILHEIEDVLVVD 51
           ++F+ R VE+ +   + LHVI +     L  ++D+  +D
Sbjct: 329 IAFLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFID 367


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 363 VQEPRPSQPAATRAFSLSQALVAARL 286
           +  PRP QP A  A   S+A+++ +L
Sbjct: 272 IPSPRPPQPVAVEAIQQSRAVISQQL 297


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 427 PFHIEVPAARRRSGQHCLRARREKETKKSGRSRHR 531
           P H ++P+A+R + Q C+    E+  + S  S+ R
Sbjct: 23  PSHEKIPSAKRTAVQFCIGPTHEQSPRMSTVSQGR 57


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 126 ASVPPC-HPGS*VNYPSRNRRRP 61
           AS PP  HP S  NYPS +RR+P
Sbjct: 301 ASRPPSNHPHS-SNYPSSSRRKP 322


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 317 EKALVAAGWEGRGSWTEEEKEEL 385
           EK L AAG +G G WT +   E+
Sbjct: 255 EKILDAAGQKGTGKWTAQNALEM 277


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 242 SRPGQERIKLLKHAHKRAATRAWEREKALVAAGWEGRGSWTEEEKEEL 385
           SR G     +     + AA     R +     G+  R  WT+EE+ EL
Sbjct: 522 SRSGGRSSAMRVSIERSAARSGTRRSQGNPYEGYRTRRKWTDEEENEL 569


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 108 DMEELRRL-SGKFNVSQDETNDQGLEVRVHAVGKGSAQAVIVLRYGVDPAKSESN 269
           ++EE RRL SGKFN S D+ ++           KG+  A       V  +K ++N
Sbjct: 380 NIEERRRLFSGKFNKSGDKKSNDNYNGMKRNFRKGNRGAFDGRSKEVTTSKKQNN 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,718
Number of Sequences: 5004
Number of extensions: 42786
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)