Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021173
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402... 31 0.79
02_01_0247 - 1632425-1632646,1632873-1632958,1633209-1633332,163... 29 2.4
01_06_0606 + 30554734-30555480,30556508-30556756,30556889-305570... 29 2.4
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980... 29 3.2
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455 29 3.2
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 29 3.2
02_05_0868 + 32342967-32343915,32344389-32344447 28 5.6
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420 28 7.4
10_08_0128 - 15017499-15017909 27 9.7
09_04_0417 + 17404433-17405392 27 9.7
>06_01_0570 +
4026889-4027537,4028340-4028689,4029258-4029433,
4029593-4029659,4029746-4029780,4030084-4030186,
4031606-4031699,4031764-4031813,4031889-4032000,
4032275-4032401,4032491-4032941
Length = 737
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 305 AWEREKALVAAGWEGRG-SWTEEEKEELISHGIVDGWAARDVHSISKYPQLADD 463
A ER + L+A W G S E E ++ G ++ W A D + +KY LA +
Sbjct: 166 AEERVRELLAVEWAAIGQSRLEMAAERIVGDGAIETWRAADEVTRAKYRLLAGE 219
>02_01_0247 -
1632425-1632646,1632873-1632958,1633209-1633332,
1633622-1633729,1634297-1634378,1634718-1634770,
1634866-1634949,1635092-1635249,1635326-1635805,
1636340-1636709
Length = 588
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 239 RSRPGQERIKLLKHAHKRAATRAWEREKALVAAGWEGRGSWTEEEKEELISHGI 400
R PG+ R+ + A W R A+VAAG SW EE ++ G+
Sbjct: 18 RGSPGRGRV--VGSAVSFGGRGRWRRGVAVVAAGAGAEASWMEEAGVAVLEEGV 69
>01_06_0606 +
30554734-30555480,30556508-30556756,30556889-30557011,
30557187-30557384
Length = 438
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 287 KRAATRAWEREKALVAAGWEGRGSWTEEEKEELISHGIVDGWAARDVH 430
++A W+ E L + G+ RG I+H I W AR H
Sbjct: 386 RKAFPNGWKGENGLYSVGFTRRGLMGTSVDARRIAHDIEQQWKARGKH 433
>11_04_0415 -
17395988-17396161,17397349-17397444,17397489-17398026,
17398106-17398422
Length = 374
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +2
Query: 323 ALVAAGWEGRGSWTEEEKEELISHG---IVDGWAARDVHSISKYPQLADDPANIVFV 484
A + GW RG W E + L+ G I D D+ +P L D+ ++ +
Sbjct: 226 AALRGGWRIRGKWFERKSGYLLEEGKNMIFDSQDGPDLDEYEFWPDLDDEGGDLYLI 282
>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
Length = 378
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 266 KLLKHAHKRAATRAWEREKALVAAGWEGRGSWTEEEKEELIS 391
K KHA K AA AW K + A E G EE++ +++
Sbjct: 157 KTKKHAEKNAAMAAWSSLKQMPEARKEPGGGGGEEQEHVVVA 198
>01_06_1818 - 40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 257 ERIKLLKHAHKRAATRAWEREKALVAAGWEGRGSWTEEEKEELISHGIVDGWAARDVHSI 436
E ++ LK K A+ W+R A ++ R EEKEE+ + G A HSI
Sbjct: 984 EIMRALKEVTKAASGMDWQRPLCKTAYWFQSRVYTNMEEKEEMTMLSL--GVGAASKHSI 1041
Query: 437 S 439
S
Sbjct: 1042 S 1042
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 195 REPGPLVPGR*FRLETR*ISPTAASVPP 112
R+P P VPGR FR +P+ A PP
Sbjct: 99 RQPAPAVPGRAFRQPGPAPAPSPAPAPP 126
>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
Length = 433
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 338 GWEGRGSWTEEEKEELISHG---IVDGWAARDVHSISKYPQLADDPANIV 478
GW RG W E + L+ G I D D+ +P L D+ ++
Sbjct: 261 GWHIRGKWFERKSGYLLEEGKNIIFDSQDGPDLDEYEFWPDLDDEGGGLI 310
>10_08_0128 - 15017499-15017909
Length = 136
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 381 NSFLTVS*TVGQRETSIPYRSTRSSPTIRPTLSSCATGEGNEEE 512
NS + V V R T++ +T P T SS ATG+G EEE
Sbjct: 26 NSQMKVLVAVDDRSTAVA--ATARWPGCSTTSSSPATGDGGEEE 67
>09_04_0417 + 17404433-17405392
Length = 319
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 302 RAWEREKALVAAGWEGRGSWTEEEKEE 382
RA +A++A+GW G W E + EE
Sbjct: 266 RAAAYYQAVMASGWPGMAEWLESKGEE 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,477
Number of Sequences: 37544
Number of extensions: 327236
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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