Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021173
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)                  28   7.5  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  27   9.9  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  27   9.9  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      27   9.9  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +3

Query: 102  RDDMEELRRLSGKFNVSQDETNDQGLEV 185
            R DM  L+++ G++N+S+D+T  +G+ V
Sbjct: 984  RPDMPVLQKIGGRYNISEDDTKTEGVLV 1011


>SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 54  HDQDVFYFVKDNSLKIRDDMEELRRLSGKFNVSQDETNDQGLEVRVHAVGKGSAQAVI 227
           +D+  + F  DN+ +I DD+E L+R+   F + +   + + L+     V K     V+
Sbjct: 229 NDKFEYLFNFDNTFEIHDDIEVLKRMGMAFGLEKKSCSVENLKTSRTMVPKALEPYVV 286


>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
          Length = 1284

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 57   DQDVFYFVKDNSLKIRDDMEELRRLSGKFNVSQDETNDQGLE 182
            D +V +  ++   K+R++MEELR  S     + ++   Q LE
Sbjct: 1051 DNEVCHDARNTISKLREEMEELRESSAAAQKALEQEKQQRLE 1092


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 445 PAARRRSGQHCLRARREKETKKSGRSRHRS*LPKAYVKVKRR 570
           P  RRRS     R  R+  + +  RSR RS  PK+ ++ + R
Sbjct: 295 PRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSR 336


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = -3

Query: 216 EQSPYPQREPGPLVPGR*FRLETR*ISPTAASVPPCHPGS*VNYPSRNRRRPGR 55
           +Q P P   P P  P R  + E R I P     PP  PG   + P R    PGR
Sbjct: 295 DQKPGPPGRP-PFEPDR-LQHEAR-IPPHDQGRPPYEPGRPPHEPGRPPHEPGR 345


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = -3

Query: 216 EQSPYPQREPGPLVPGR*FRLETR*ISPTAASVPPCHPGS*VNYPSRNRRRPGR 55
           +Q P P   P P  P R  + E R I P     PP  PG   + P R    PGR
Sbjct: 61  DQKPGPPGRP-PFEPDR-LQHEAR-IPPHDQGRPPYEPGRPPHEPGRPPHEPGR 111


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 554  T*ALGSHERWRERPLFFVSFSRRARRQCW 468
            T  L +H R R  PL  ++F  + R+ CW
Sbjct: 3909 TAVLQTHSRMRNVPLDSLAFEYKVRKACW 3937


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,651
Number of Sequences: 59808
Number of extensions: 354378
Number of successful extensions: 1032
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)