Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021173
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical pr... 29 3.8
U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protei... 29 3.8
U41104-6|AAK77633.2| 419|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical pr... 28 6.6
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 28 6.6
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 28 6.6
AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical ... 28 6.6
Z66564-6|CAA91473.4| 737|Caenorhabditis elegans Hypothetical pr... 27 8.7
AY887904-1|AAX34416.1| 737|Caenorhabditis elegans anion transpo... 27 8.7
>Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical
protein F11A6.1b protein.
Length = 760
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 381 NSFLTVS*TVGQRETSIPYRSTRSSPTIRPTLSSCATGE 497
NS T+S + +IP+ S S T+ T SS ATGE
Sbjct: 378 NSIYTLSISSATENGNIPWYSEACSSTLATTYSSGATGE 416
>Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical
protein F11A6.1a protein.
Length = 692
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 381 NSFLTVS*TVGQRETSIPYRSTRSSPTIRPTLSSCATGE 497
NS T+S + +IP+ S S T+ T SS ATGE
Sbjct: 378 NSIYTLSISSATENGNIPWYSEACSSTLATTYSSGATGE 416
>U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protein
protein.
Length = 692
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 381 NSFLTVS*TVGQRETSIPYRSTRSSPTIRPTLSSCATGE 497
NS T+S + +IP+ S S T+ T SS ATGE
Sbjct: 378 NSIYTLSISSATENGNIPWYSEACSSTLATTYSSGATGE 416
>U41104-6|AAK77633.2| 419|Caenorhabditis elegans Hypothetical
protein T12C9.7 protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 558 LYVGFRK--SRAVAGAATLLRFLLPSRTKTMLAGSSASCGYFDMEWTSLAAQPSTI 397
LYV R+ S VA AAT L F + S +LA + YF S+ PST+
Sbjct: 290 LYVHNRRFPSDVVANAATCLAFAIDSEVYFILALKTGFFTYFKYFQPSVDQTPSTV 345
>Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical
protein F23A7.5 protein.
Length = 632
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 451 ARRRSGQHCLRARREKETKKSGRSRHR 531
+RRRS + RR ++ KSGR R R
Sbjct: 605 SRRRSDRRARHERRHRDDDKSGRDRQR 631
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
homolog protein.
Length = 1257
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = -1
Query: 125 PQFLHVIPDLK*IILHEIEDVLV 57
P+ +H++PDLK + LHE E++++
Sbjct: 355 PEGIHLLPDLKVLDLHENENLVM 377
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = -1
Query: 125 PQFLHVIPDLK*IILHEIEDVLV 57
P+ +H++PDLK + LHE E++++
Sbjct: 355 PEGIHLLPDLKVLDLHENENLVM 377
>AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical
protein T20H9.1 protein.
Length = 312
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 9 TVFNNSYFLDVHFSIHDQDVFYFVKDNSLKIRDDM---EELRRLSGKFNVS 152
T F S HF + +F ++N++KIRDD+ + RR FN S
Sbjct: 205 TAFKFSIETLFHFESLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSS 255
>Z66564-6|CAA91473.4| 737|Caenorhabditis elegans Hypothetical
protein F52D10.1 protein.
Length = 737
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 636 KKLALSTLYPVKGLVSVFQFKMASF--DLYVGFRKSRAVAGAATLLRFLLPSRTKTMLA 466
K + YP +GLV F+ +MA++ D G + R+V+ + FL+ + T +A
Sbjct: 220 KNSSFCPYYPFRGLVKDFKRRMANYKSDYLDGIKDRRSVSKVISTAVFLIFTILPTSIA 278
>AY887904-1|AAX34416.1| 737|Caenorhabditis elegans anion
transporter ABTS-2 protein.
Length = 737
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 636 KKLALSTLYPVKGLVSVFQFKMASF--DLYVGFRKSRAVAGAATLLRFLLPSRTKTMLA 466
K + YP +GLV F+ +MA++ D G + R+V+ + FL+ + T +A
Sbjct: 220 KNSSFCPYYPFRGLVKDFKRRMANYKSDYLDGIKDRRSVSKVISTAVFLIFTILPTSIA 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,735
Number of Sequences: 27780
Number of extensions: 251566
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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