Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021173
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    29   2.0  
At3g43440.1 68416.m04602 expressed protein                             29   2.0  
At3g52220.1 68416.m05737 expressed protein                             29   3.5  
At4g18975.1 68417.m02795 pentatricopeptide (PPR) repeat-containi...    28   4.7  
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   6.1  
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    27   8.1  

>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 481 RARREKETKKSGRSRHRS*LPKAYVKVKRRHFELKN 588
           R RRE+E + S RSR     P+   +  RRH + K+
Sbjct: 122 RERREREKRSSSRSRREEKEPEVVERGSRRHRDKKD 157


>At3g43440.1 68416.m04602 expressed protein
          Length = 238

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 439 EVPAARRRSGQHCLRARREKETKKSG 516
           ++P ARRRS Q  L  RR++ TK  G
Sbjct: 99  DLPIARRRSLQRFLEKRRDRSTKPDG 124


>At3g52220.1 68416.m05737 expressed protein
          Length = 237

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 445 PAARRRSGQHCLRARREKETKKSGR-SRHRS*LPKAYVKVKRRH 573
           PA R +  +H  R +RE+  K+S R S  R    K   + KRRH
Sbjct: 189 PAKREKEERHDRREKRERHEKRSARDSDDRKKHKKEKKEKKRRH 232


>At4g18975.1 68417.m02795 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 287

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 12  VFNNSYFLDVHFSIHDQDVFYFVKDNSLKIRDDMEELRRLSGKFNVSQDETN 167
           +F     L  H  +HD+ +  F     LK+  D +  RR++  F     E N
Sbjct: 204 LFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEEN 255


>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavanone 3-hydroxylase
           [Persea americana][GI:727410]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 341

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 21  NSYFLDVHFSIHDQDVFYFVKDNSLKI-RDDMEELRRLSGKFNVSQDETNDQGLEVRVH 194
           N   +D   S+  ++ F    +  +K+  DD  +  RLS  FNV ++E N+    +R+H
Sbjct: 73  NKQIIDEMVSVA-REFFSMSMEEKMKLYSDDPTKTTRLSTSFNVKKEEVNNWRDYLRLH 130


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
           contains Pfam PF02138: Beige/BEACH domain; similar to
           LBA isoform gamma (GI:10257405) [Mus musculus]; similar
           to beige-like protein (CDC4L) - Homo sapiens; similar to
           Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
           protein homolog implicated in neuronal membrane traffic
           (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 417 AAQPSTIP*EMXXXXXXSVQEPRPSQPAATRAFSLSQALVAA 292
           AA PS    ++       ++ P+P+QP A +A + ++A + +
Sbjct: 525 AASPSFAADDLHRLLGFIIESPQPNQPNAAKAQTFAEAFITS 566


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,024
Number of Sequences: 28952
Number of extensions: 236997
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)