Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021172
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 63 5e-11
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 54 3e-08
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 41 2e-04
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 41 2e-04
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 29 0.97
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.2
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 6.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 6.9
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 62.9 bits (146), Expect = 5e-11
Identities = 33/89 (37%), Positives = 47/89 (52%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L+ L C T GKRL + W+C P + I R + V+ + DN + L
Sbjct: 688 EGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTAINARLDVVELIADNPVIRDTIWGFLHK 747
Query: 454 LPDLERLLAKVHTLGNLKLQSSIRILEQY 540
LPDLERL+++VH G K +R+LE +
Sbjct: 748 LPDLERLISRVHA-GRSKPADFVRVLEGF 775
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 53.6 bits (123), Expect = 3e-08
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +1
Query: 283 LYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDN---RELCQNAKNVLTS 453
LY LN C TAMG R L +W+ P + I+ R + V L ++ R+L + ++L S
Sbjct: 340 LYGLLNHCRTAMGARNLRRWIVQPLLDAKSIERRHDLVSALVEDAEARQLLLDDDHLLRS 399
Query: 454 LPDLERLLAKVHTLGNLKLQSSIRILE 534
+PD+ +L ++ T G+ L+ +RI +
Sbjct: 400 IPDIPKLCRRL-TRGSASLEDVVRIYQ 425
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +1
Query: 277 GCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSL 456
G L +N T G RLL + +C+PS NI I R + V+ ELC N+L
Sbjct: 366 GSLLHAINKTVTKSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKVINLLKKS 425
Query: 457 PDLERLLAKVHTLGNLKLQSSIRILEQYS-TKRRH 558
D R+L + +G +++ + +S TK H
Sbjct: 426 NDTHRILQHL-LMGRGNSYDLLKMADNFSITKEIH 459
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +1
Query: 277 GCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCL-FDNRELCQNAKNVLTS 453
G L+ L+ T G+R+L +W+ P + I ER +AV+ L F++ Q + +L
Sbjct: 425 GSLFWVLDRTYTRFGQRMLQRWLQKPLVDKENIIERLDAVEELAFNSNSQVQAIRKMLYR 484
Query: 454 LPDLERLLAKVH 489
LPDLE+ L++++
Sbjct: 485 LPDLEKGLSRIY 496
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 28.7 bits (61), Expect = 0.97
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 522 PDSRAIFYEEKTYSKRKVLEFISVLNGFTSALTLAESFSDVDSVLLKRITQV 677
PDS AI YE + + VLE + + F + ++ E F D LL ++T +
Sbjct: 166 PDSLAIHYEHAHMALKYVLELVPRAHSFLYS-SILEEFPYKDESLLAQMTYI 216
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 2.2
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = +1
Query: 388 EAVKCLFDNRELCQNAKNVLTSLPDLERLLAKVHTLGNLKLQSSIRILEQYSTKRRHIQS 567
EA + L +N + +++ +LPD+E + V +L L + + ST+++ S
Sbjct: 1378 EAFEELLEN-PMQSKVTHIILNLPDIEAYVLFVKSLQLCSLYKDTKFILVTSTRQKESLS 1436
Query: 568 GRF*SSSLC*TASPQH*L-LPRASVMWTRCY*KESHKSKVAIIRITGTL*NFFKEAFNQQ 744
F S C + S + L L + S + Y K K+ G L + ++A +Q
Sbjct: 1437 KIFSDSEDCNSESIHYVLKLVKPSKFFPLFYSDSEEKGKI------GALNDMTRKAAMEQ 1490
Query: 745 EAEKE 759
+A+ E
Sbjct: 1491 KADAE 1495
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIK 70
+ F+ D L PAP+CE AI+
Sbjct: 205 RSFVDDNDHLRWCPAPDCEFAIE 227
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +2
Query: 11 LHQGDSLGLTPAPNCELAIKALGGXVSYLTEC-----LLDIQILGMSQFTSYAPPDVLNR 175
+ DS+ N EL + AL + Y + +L SQ TSY PP+ ++R
Sbjct: 782 ISSNDSIVPKALNNRELQLSALASTIGYKLDPDDVYNILSFLSFANSQVTSYTPPNSIDR 841
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,536
Number of Sequences: 5004
Number of extensions: 57678
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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