Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021172
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 63 2e-10
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 55 5e-08
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 45 6e-05
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 33 0.33
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233... 30 2.4
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 29 4.1
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 4.1
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075... 29 4.1
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 29 5.4
12_02_1111 - 26157796-26160330 28 7.2
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 28 9.5
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 28 9.5
02_02_0351 + 9257204-9261388 28 9.5
>01_01_0571 -
4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 63.3 bits (147), Expect = 2e-10
Identities = 35/93 (37%), Positives = 47/93 (50%)
Frame = +1
Query: 277 GCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSL 456
G LY LN C T GKRLL +W+C P +I+ I ER + V+ N L L +
Sbjct: 702 GTLYKHLNHCITPCGKRLLRRWICHPLKDIDAINERLDIVEGFIQNCGLGSVTLEHLRKV 761
Query: 457 PDLERLLAKVHTLGNLKLQSSIRILEQYSTKRR 555
PDLERLL +V + L + + + KRR
Sbjct: 762 PDLERLLGRVKSTVGLSSAVLLPFVGEKILKRR 794
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 55.2 bits (127), Expect = 5e-08
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Frame = +1
Query: 277 GCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQ-NAKNVLTS 453
G LY +LN C T GKRLL +W+ P I +RQ A+ + C + L+
Sbjct: 687 GTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSAIATFKGSGHECAIQFRKDLSR 746
Query: 454 LPDLERLLAKVHTL--GNLKLQSSIRILEQYSTKRRH 558
LPD+ERLLA++ + N + S+ + E S + H
Sbjct: 747 LPDMERLLARLFSSCDKNGRSSKSVVLYEDASKRLLH 783
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 62 AIKALGGXVSYLTECLLDIQILGMSQF 142
A+ ALGG + YL + LLD ++L ++F
Sbjct: 622 ALSALGGSLFYLRQSLLDEKLLPCAEF 648
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 304 CSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSLPDLERL 474
C+ MGKRLL +W+ P ++N I R + V+ ++ EL Q + L + D++RL
Sbjct: 329 CTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQAFVEDPELRQGLRYQLKRMSDIDRL 385
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 331 LYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSL 456
LY+W SP + KE ++ CL D++E C+ K+ ++
Sbjct: 2744 LYKWALSPLKALQRQKESEDIDSCLDDSQEACEGNKDAARAI 2785
>10_01_0216 -
2329413-2330419,2331382-2331537,2332363-2332897,
2333026-2333514
Length = 728
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 658 NNTESTSLKLSARVSAEVKPFNTEMNSRTFRFEYVFSS*NIALESGCCFEASSFLG 491
NN++ ++++ ++S E + +M R FEY S + + CC A S +G
Sbjct: 493 NNSKEQQMQMAKQLSLEEFHYRQKMEKRGSTFEYGGGSDSRSAPDACCNVAGSCVG 548
>06_03_0032 -
15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 240 ASSTKVLPPSQQLSTLCLSDSFLFSTSGGAYDVN 139
A TK LPP+ ST+ DS S AYD N
Sbjct: 641 ARVTKALPPAHYASTVARDDSLAAQASTVAYDDN 674
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -3
Query: 186 SDSFLFSTSGGAYDVNCDIPSICMSSKHSVK*ETHPPRALIASSQLGA 43
+D+ + +T+G A PS+C S HS K +TH +++ ++ + A
Sbjct: 501 ADAVVTATNGSAI-AESPRPSLCTESMHSPKCKTHSSESILQNNSVPA 547
>01_03_0220 -
13905808-13905831,13906694-13906885,13906960-13907519,
13910007-13910187
Length = 318
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 415 RELCQNAKNVLTSLPDLERLLAKVHTLGNL 504
R+LC AK VL S P+L R+ A V G++
Sbjct: 34 RQLCVEAKRVLLSQPNLLRIHAPVKICGDI 63
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 525 DSRAIFYEEKTYSKRKVLEFISVLNGFTSALTLAE----SFSDVDSV 653
+ RA+ Y E TY K K+ ++ +G A+T+A + +D+D V
Sbjct: 341 NKRAVIYGEPTYGKGKIQSVFALSDGSGLAVTVARYETPAHTDIDKV 387
>12_02_1111 - 26157796-26160330
Length = 844
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 322 KRLLYQWVCSPSANINVIKERQEAVKCLF 408
+++LY W+CSP+ + N I + K LF
Sbjct: 667 QQVLYHWLCSPNPDFNEIMNWYKGWKGLF 695
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 273 VLYYP*ILSVIASSTKVLPPSQQLSTLCLSDSFLFSTSGG 154
V ++P I S I+S T VLP ++ CLS+ S S G
Sbjct: 214 VTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPG 253
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 445 LTSLPDLERLLAKVHTLGNLKLQSSIRILEQY--STKRRHI 561
+T LP +ER L+ +H L + QSS+ E Y ST RR I
Sbjct: 1171 ITLLPQIERHLSNLHGLDEVFTQSSLLREEGYLNSTLRRVI 1211
>02_02_0351 + 9257204-9261388
Length = 1394
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 340 WVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSLPDLERLLAK 483
WVC S + +V+K QE +KC++ + L++L L+ +A+
Sbjct: 276 WVCV-STHFDVVKLTQEILKCIYHAENEGSRRVDELSNLDQLQITIAQ 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,126,462
Number of Sequences: 37544
Number of extensions: 373609
Number of successful extensions: 856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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