Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021172
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   6e-14
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               55   6e-08
SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)                 30   2.4  
SB_11940| Best HMM Match : TspO_MBR (HMM E-Value=6.8)                  28   7.3  
SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 33/78 (42%), Positives = 52/78 (66%)
 Frame = +1

Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
           +G L ++L+ CST  GKRL  QW+C+P  N   I +R +A++ L     +  + K +L +
Sbjct: 402 QGTLLEQLDHCSTPFGKRLFKQWLCAPLCNPMAINDRLDAIEDLMAVPAVVCDVKEILKT 461

Query: 454 LPDLERLLAKVHTLGNLK 507
           LPDLERLL K+H+LG+++
Sbjct: 462 LPDLERLLRKIHSLGSVR 479



 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
 Frame = +3

Query: 519 HPDSRAIFYEEKTYSKRKVLEFISVLNGFTSALTLAESF----SDVDSVLLKR-ITQ-VE 680
           HPD RAI Y E+TYSKRK+ +F+SVL G  S + + + F    S+  S LLK+ ITQ  +
Sbjct: 484 HPDGRAILYNEETYSKRKIADFLSVLEGLKSTVRIVKLFKDHVSEFKSKLLKQIITQDAQ 543

Query: 681 G-----GNYPDYRDTLKFFQGGLQSARGRE 755
           G     G +P     LK FQG     + ++
Sbjct: 544 GDKSSNGRFPHMESELKAFQGAFDHEKAKK 573


>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 27/79 (34%), Positives = 45/79 (56%)
 Frame = +1

Query: 283 LYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSLPD 462
           L+  +N   T  G+RLL+  +C+PS  ++VI+ R  +V+  +++R L +  +  L   PD
Sbjct: 230 LFGVMNTTCTHAGRRLLHARICAPSTQVHVIQSRLNSVEMFYNDRHLNEEVRQCLKRCPD 289

Query: 463 LERLLAKVHTLGNLKLQSS 519
           +ER L K   L  L  +SS
Sbjct: 290 IERTLQKEGELDRLLQRSS 308


>SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)
          Length = 642

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 349 SPSANINVIKERQEAVKC-LFDNRELCQNAKNVLTS---LPDLERLLAKVHTLGNLKLQS 516
           SPS ++    ER E VK  +F + +LC     ++ S    PDL ++ AK+      + ++
Sbjct: 126 SPSTDVLFEGERDEPVKAKIFMHGDLCWTDFKLMISRSTTPDLVKMTAKIQDFFTQQHRN 185

Query: 517 SIRIL 531
           SIR L
Sbjct: 186 SIRAL 190


>SB_11940| Best HMM Match : TspO_MBR (HMM E-Value=6.8)
          Length = 229

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 50  NCELAIKALGGXVSY--LTECLLDIQILG-MSQFTSYAPPDVLNRKLSERH 193
           N    + ++GG  S+  L  CLL ++    +  + +  PPDVL+  LS RH
Sbjct: 112 NTMYTLASMGGFFSFTLLLICLLLVKRRRKLYDYKALVPPDVLDHDLSNRH 162


>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 113 DIQILGMSQFTSYAPPDVLNRKLSERHKVDNCWEGGNTLVLDAITLRIYG 262
           D Q++G     SYA P V +  ++    V+N       LVLDA  L+IYG
Sbjct: 450 DNQVIGQGSVYSYAVPMVFSGNITF---VNNT---NTALVLDAAVLKIYG 493


>SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 538 IALESGCCFEASSFLGCVL*LTDVLNRVMMSKRSLHFDI 422
           +AL +   F+  +   CV  +   LNR + SKR++ F +
Sbjct: 243 VALSNNTSFDRDTVESCVKEVLQALNRSIQSKRNVEFSL 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,182,032
Number of Sequences: 59808
Number of extensions: 430823
Number of successful extensions: 971
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)