Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021172
(770 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U73737-1|AAB47425.1| 1360|Homo sapiens hMSH6 protein. 71 5e-12
U54777-1|AAB39212.2| 1360|Homo sapiens hMSH6 protein protein. 71 5e-12
U28946-1|AAC50461.1| 1360|Homo sapiens G/T mismatch binding prot... 71 5e-12
D89646-1|BAA23675.1| 1068|Homo sapiens GTBP-ALT protein. 71 5e-12
D89645-2|BAA23673.1| 1068|Homo sapiens GTBP-ALT protein. 71 5e-12
D89645-1|BAA23674.1| 1360|Homo sapiens GTBP-N protein. 71 5e-12
BC004246-1|AAH04246.1| 1360|Homo sapiens mutS homolog 6 (E. coli... 71 5e-12
AY082894-1|AAL87401.1| 1358|Homo sapiens mutS homolog 6 (E. coli... 71 5e-12
DQ648895-1|ABG49490.1| 101|Homo sapiens MSH2-Ex5 isoform protein. 48 5e-05
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 47 7e-05
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 47 7e-05
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 47 7e-05
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 47 7e-05
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 47 7e-05
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 47 7e-05
L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein. 47 7e-05
L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein. 47 7e-05
L47578-1|AAB59570.1| 486|Homo sapiens MSH2 protein. 47 7e-05
L47577-1|AAB59569.1| 428|Homo sapiens MSH2 protein. 47 7e-05
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 47 7e-05
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 47 7e-05
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 47 7e-05
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 47 7e-05
AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein. 47 7e-05
U61981-1|AAB06045.1| 1128|Homo sapiens hMSH3 protein. 40 0.013
BC130436-1|AAI30437.1| 1137|Homo sapiens mutS homolog 3 (E. coli... 40 0.013
BC130434-1|AAI30435.1| 1137|Homo sapiens mutS homolog 3 (E. coli... 40 0.013
BC011817-1|AAH11817.1| 848|Homo sapiens MSH3 protein protein. 40 0.013
AY275681-1|AAP13535.1| 1140|Homo sapiens mutS homolog 3 (E. coli... 40 0.013
L47576-1|AAB59568.1| 410|Homo sapiens MSH2 protein. 38 0.030
J04810-1|AAB47281.1| 1137|Homo sapiens MSH3 protein. 37 0.092
D61419-1|BAD27111.1| 1137|Homo sapiens hMSH3 protein protein. 37 0.092
>U73737-1|AAB47425.1| 1360|Homo sapiens hMSH6 protein.
Length = 1360
Score = 70.9 bits (166), Expect = 5e-12
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L +R++ C T GKRLL QW+C+P N I +R +A++ L + +L
Sbjct: 755 EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKK 814
Query: 454 LPDLERLLAKVHTLGN-LKLQS 516
LPDLERLL+K+H +G+ LK Q+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQN 836
Score = 60.5 bits (140), Expect = 7e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIKALGGXVSYLTECLLDIQILGMSQFTSYAPPDVLNRKL 181
K + DS+GLTP ELA+ ALGG V YL +CL+D ++L M+ F Y P D + +
Sbjct: 660 KGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD--SDTV 717
Query: 182 SERHKVDNCWEGGNTLVLDAITL 250
S + +VLDA+TL
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTL 740
Score = 54.8 bits (126), Expect = 3e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGF---TSALTLAESFSD-VDSVLLKRI--- 668
S+ HPDSRAI YEE TYSK+K+++F+S L GF + + E +D S +LK++
Sbjct: 834 SQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISL 893
Query: 669 -TQVEGGNYPD 698
T+ G +PD
Sbjct: 894 QTKNPEGRFPD 904
>U54777-1|AAB39212.2| 1360|Homo sapiens hMSH6 protein protein.
Length = 1360
Score = 70.9 bits (166), Expect = 5e-12
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L +R++ C T GKRLL QW+C+P N I +R +A++ L + +L
Sbjct: 755 EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKK 814
Query: 454 LPDLERLLAKVHTLGN-LKLQS 516
LPDLERLL+K+H +G+ LK Q+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQN 836
Score = 60.5 bits (140), Expect = 7e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIKALGGXVSYLTECLLDIQILGMSQFTSYAPPDVLNRKL 181
K + DS+GLTP ELA+ ALGG V YL +CL+D ++L M+ F Y P D + +
Sbjct: 660 KGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD--SDTV 717
Query: 182 SERHKVDNCWEGGNTLVLDAITL 250
S + +VLDA+TL
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTL 740
Score = 54.8 bits (126), Expect = 3e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGF---TSALTLAESFSD-VDSVLLKRI--- 668
S+ HPDSRAI YEE TYSK+K+++F+S L GF + + E +D S +LK++
Sbjct: 834 SQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISL 893
Query: 669 -TQVEGGNYPD 698
T+ G +PD
Sbjct: 894 QTKNPEGRFPD 904
>U28946-1|AAC50461.1| 1360|Homo sapiens G/T mismatch binding protein
protein.
Length = 1360
Score = 70.9 bits (166), Expect = 5e-12
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L +R++ C T GKRLL QW+C+P N I +R +A++ L + +L
Sbjct: 755 EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKK 814
Query: 454 LPDLERLLAKVHTLGN-LKLQS 516
LPDLERLL+K+H +G+ LK Q+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQN 836
Score = 60.5 bits (140), Expect = 7e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIKALGGXVSYLTECLLDIQILGMSQFTSYAPPDVLNRKL 181
K + DS+GLTP ELA+ ALGG V YL +CL+D ++L M+ F Y P D + +
Sbjct: 660 KGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD--SDTV 717
Query: 182 SERHKVDNCWEGGNTLVLDAITL 250
S + +VLDA+TL
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTL 740
Score = 54.8 bits (126), Expect = 3e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGF---TSALTLAESFSD-VDSVLLKRI--- 668
S+ HPDSRAI YEE TYSK+K+++F+S L GF + + E +D S +LK++
Sbjct: 834 SQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISL 893
Query: 669 -TQVEGGNYPD 698
T+ G +PD
Sbjct: 894 QTKNPEGRFPD 904
>D89646-1|BAA23675.1| 1068|Homo sapiens GTBP-ALT protein.
Length = 1068
Score = 70.9 bits (166), Expect = 5e-12
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L +R++ C T GKRLL QW+C+P N I +R +A++ L + +L
Sbjct: 755 EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKK 814
Query: 454 LPDLERLLAKVHTLGN-LKLQS 516
LPDLERLL+K+H +G+ LK Q+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQN 836
Score = 60.5 bits (140), Expect = 7e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIKALGGXVSYLTECLLDIQILGMSQFTSYAPPDVLNRKL 181
K + DS+GLTP ELA+ ALGG V YL +CL+D ++L M+ F Y P D + +
Sbjct: 660 KGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD--SDTV 717
Query: 182 SERHKVDNCWEGGNTLVLDAITL 250
S + +VLDA+TL
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTL 740
Score = 54.8 bits (126), Expect = 3e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGF---TSALTLAESFSD-VDSVLLKRI--- 668
S+ HPDSRAI YEE TYSK+K+++F+S L GF + + E +D S +LK++
Sbjct: 834 SQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISL 893
Query: 669 -TQVEGGNYPD 698
T+ G +PD
Sbjct: 894 QTKNPEGRFPD 904
>D89645-2|BAA23673.1| 1068|Homo sapiens GTBP-ALT protein.
Length = 1068
Score = 70.9 bits (166), Expect = 5e-12
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L +R++ C T GKRLL QW+C+P N I +R +A++ L + +L
Sbjct: 755 EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKK 814
Query: 454 LPDLERLLAKVHTLGN-LKLQS 516
LPDLERLL+K+H +G+ LK Q+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQN 836
Score = 60.5 bits (140), Expect = 7e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIKALGGXVSYLTECLLDIQILGMSQFTSYAPPDVLNRKL 181
K + DS+GLTP ELA+ ALGG V YL +CL+D ++L M+ F Y P D + +
Sbjct: 660 KGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD--SDTV 717
Query: 182 SERHKVDNCWEGGNTLVLDAITL 250
S + +VLDA+TL
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTL 740
Score = 54.8 bits (126), Expect = 3e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGF---TSALTLAESFSD-VDSVLLKRI--- 668
S+ HPDSRAI YEE TYSK+K+++F+S L GF + + E +D S +LK++
Sbjct: 834 SQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISL 893
Query: 669 -TQVEGGNYPD 698
T+ G +PD
Sbjct: 894 QTKNPEGRFPD 904
>D89645-1|BAA23674.1| 1360|Homo sapiens GTBP-N protein.
Length = 1360
Score = 70.9 bits (166), Expect = 5e-12
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L +R++ C T GKRLL QW+C+P N I +R +A++ L + +L
Sbjct: 755 EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKK 814
Query: 454 LPDLERLLAKVHTLGN-LKLQS 516
LPDLERLL+K+H +G+ LK Q+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQN 836
Score = 60.5 bits (140), Expect = 7e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIKALGGXVSYLTECLLDIQILGMSQFTSYAPPDVLNRKL 181
K + DS+GLTP ELA+ ALGG V YL +CL+D ++L M+ F Y P D + +
Sbjct: 660 KGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD--SDTV 717
Query: 182 SERHKVDNCWEGGNTLVLDAITL 250
S + +VLDA+TL
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTL 740
Score = 54.8 bits (126), Expect = 3e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGF---TSALTLAESFSD-VDSVLLKRI--- 668
S+ HPDSRAI YEE TYSK+K+++F+S L GF + + E +D S +LK++
Sbjct: 834 SQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISL 893
Query: 669 -TQVEGGNYPD 698
T+ G +PD
Sbjct: 894 QTKNPEGRFPD 904
>BC004246-1|AAH04246.1| 1360|Homo sapiens mutS homolog 6 (E. coli)
protein.
Length = 1360
Score = 70.9 bits (166), Expect = 5e-12
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L +R++ C T GKRLL QW+C+P N I +R +A++ L + +L
Sbjct: 755 EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKK 814
Query: 454 LPDLERLLAKVHTLGN-LKLQS 516
LPDLERLL+K+H +G+ LK Q+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQN 836
Score = 60.5 bits (140), Expect = 7e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIKALGGXVSYLTECLLDIQILGMSQFTSYAPPDVLNRKL 181
K + DS+GLTP ELA+ ALGG V YL +CL+D ++L M+ F Y P D + +
Sbjct: 660 KGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD--SDTV 717
Query: 182 SERHKVDNCWEGGNTLVLDAITL 250
S + +VLDA+TL
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTL 740
Score = 54.8 bits (126), Expect = 3e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGF---TSALTLAESFSD-VDSVLLKRI--- 668
S+ HPDSRAI YEE TYSK+K+++F+S L GF + + E +D S +LK++
Sbjct: 834 SQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISL 893
Query: 669 -TQVEGGNYPD 698
T+ G +PD
Sbjct: 894 QTKNPEGRFPD 904
>AY082894-1|AAL87401.1| 1358|Homo sapiens mutS homolog 6 (E. coli)
protein.
Length = 1358
Score = 70.9 bits (166), Expect = 5e-12
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 EGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTS 453
EG L +R++ C T GKRLL QW+C+P N I +R +A++ L + +L
Sbjct: 755 EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKK 814
Query: 454 LPDLERLLAKVHTLGN-LKLQS 516
LPDLERLL+K+H +G+ LK Q+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQN 836
Score = 60.5 bits (140), Expect = 7e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 2 KEFLHQGDSLGLTPAPNCELAIKALGGXVSYLTECLLDIQILGMSQFTSYAPPDVLNRKL 181
K + DS+GLTP ELA+ ALGG V YL +CL+D ++L M+ F Y P D + +
Sbjct: 660 KGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD--SDTV 717
Query: 182 SERHKVDNCWEGGNTLVLDAITL 250
S + +VLDA+TL
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTL 740
Score = 54.8 bits (126), Expect = 3e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGF---TSALTLAESFSD-VDSVLLKRI--- 668
S+ HPDSRAI YEE TYSK+K+++F+S L GF + + E +D S +LK++
Sbjct: 834 SQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISL 893
Query: 669 -TQVEGGNYPD 698
T+ G +PD
Sbjct: 894 QTKNPEGRFPD 904
>DQ648895-1|ABG49490.1| 101|Homo sapiens MSH2-Ex5 isoform protein.
Length = 101
Score = 47.6 bits (108), Expect = 5e-05
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QWV P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 25 LNKCKTPQGQRLVNQWVKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 84
Query: 472 LLAK 483
L K
Sbjct: 85 LAKK 88
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein.
Length = 810
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein.
Length = 534
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>L47578-1|AAB59570.1| 486|Homo sapiens MSH2 protein.
Length = 486
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>L47577-1|AAB59569.1| 428|Homo sapiens MSH2 protein.
Length = 428
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein.
Length = 586
Score = 47.2 bits (107), Expect = 7e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQN-AKNVLTSLPDLER 471
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q +++L PDL R
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNR 389
Query: 472 LLAK 483
L K
Sbjct: 390 LAKK 393
>U61981-1|AAB06045.1| 1128|Homo sapiens hMSH3 protein.
Length = 1128
Score = 39.5 bits (88), Expect = 0.013
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 VQDEGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAV-KCLFDNRELCQNAKN 441
++ +G L L+ T+ G+R L +WV P + I R +AV + L + +N
Sbjct: 545 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 604
Query: 442 VLTSLPDLERLLAKVH 489
L LPD+ER L ++
Sbjct: 605 HLRKLPDIERGLCSIY 620
>BC130436-1|AAI30437.1| 1137|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1137
Score = 39.5 bits (88), Expect = 0.013
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 VQDEGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAV-KCLFDNRELCQNAKN 441
++ +G L L+ T+ G+R L +WV P + I R +AV + L + +N
Sbjct: 554 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 613
Query: 442 VLTSLPDLERLLAKVH 489
L LPD+ER L ++
Sbjct: 614 HLRKLPDIERGLCSIY 629
>BC130434-1|AAI30435.1| 1137|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1137
Score = 39.5 bits (88), Expect = 0.013
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 VQDEGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAV-KCLFDNRELCQNAKN 441
++ +G L L+ T+ G+R L +WV P + I R +AV + L + +N
Sbjct: 554 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 613
Query: 442 VLTSLPDLERLLAKVH 489
L LPD+ER L ++
Sbjct: 614 HLRKLPDIERGLCSIY 629
>BC011817-1|AAH11817.1| 848|Homo sapiens MSH3 protein protein.
Length = 848
Score = 39.5 bits (88), Expect = 0.013
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 VQDEGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAV-KCLFDNRELCQNAKN 441
++ +G L L+ T+ G+R L +WV P + I R +AV + L + +N
Sbjct: 545 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 604
Query: 442 VLTSLPDLERLLAKVH 489
L LPD+ER L ++
Sbjct: 605 HLRKLPDIERGLCSIY 620
>AY275681-1|AAP13535.1| 1140|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1140
Score = 39.5 bits (88), Expect = 0.013
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 VQDEGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAV-KCLFDNRELCQNAKN 441
++ +G L L+ T+ G+R L +WV P + I R +AV + L + +N
Sbjct: 557 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 616
Query: 442 VLTSLPDLERLLAKVH 489
L LPD+ER L ++
Sbjct: 617 HLRKLPDIERGLCSIY 632
>L47576-1|AAB59568.1| 410|Homo sapiens MSH2 protein.
Length = 410
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQ 429
LN C T G+RL+ QW+ P + N I+ER V+ ++ EL Q
Sbjct: 330 LNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQ 374
>J04810-1|AAB47281.1| 1137|Homo sapiens MSH3 protein.
Length = 1137
Score = 36.7 bits (81), Expect = 0.092
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 VQDEGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAV-KCLFDNRELCQNAKN 441
++ +G L L+ T+ G+R L +WV P + I R +AV + L + +N
Sbjct: 554 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 613
Query: 442 VLTSLPDLERLLAKVH 489
L LPD+ R L ++
Sbjct: 614 HLRKLPDIGRGLCSIY 629
>D61419-1|BAD27111.1| 1137|Homo sapiens hMSH3 protein protein.
Length = 1137
Score = 36.7 bits (81), Expect = 0.092
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 VQDEGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAV-KCLFDNRELCQNAKN 441
++ +G L L+ T+ G+R L +WV P + I R +AV + L + +N
Sbjct: 554 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 613
Query: 442 VLTSLPDLERLLAKVH 489
L LPD+ R L ++
Sbjct: 614 HLRKLPDIGRGLCSIY 629
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,080,313
Number of Sequences: 237096
Number of extensions: 1907992
Number of successful extensions: 4147
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4142
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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