Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021172
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    63   2e-10
AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts hom...    51   1e-06
U58758-14|AAB93433.2|  842|Caenorhabditis elegans High incidence...    40   0.003
AF178755-1|AAD52669.1|  842|Caenorhabditis elegans HIM-14 protei...    40   0.003
AF125964-7|AAD14750.1|  350|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
 Frame = +1

Query: 283 LYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLF--DNRELCQNAKNVLTSL 456
           LY  +N CST  G+RLL  W+  P+ +   +++RQ+A+K L   D       A   L  +
Sbjct: 595 LYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQKAIKWLVSPDASSFMTTATATLKKI 654

Query: 457 PDLERLLAKVHTLGNLKLQS 516
           PDL+RLL K+HT+G LK +S
Sbjct: 655 PDLDRLLQKIHTIG-LKYRS 673



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = +3

Query: 510 SKQHPDSRAIFYEEKTYSKRKVLEFISVLNGFTSALTLAESFSDV 644
           S++HPDSRAIF++    +++K+ E ++ ++GF     L + +  V
Sbjct: 673 SEKHPDSRAIFFDTIKTNQKKIAELLAAIDGFKLCNKLRKEYIKV 717


>AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts
           homolog) family protein 2 protein.
          Length = 849

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +1

Query: 283 LYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAK-NVLTSLP 459
           LY+ LN C T  G++LL  W+  P   I+ I ER + V+ LF+N+ + Q  + ++L  +P
Sbjct: 299 LYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFENQTIRQKLRDSILARMP 358

Query: 460 DLERLLAKV 486
           D  +L  ++
Sbjct: 359 DCSQLARRL 367


>U58758-14|AAB93433.2|  842|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 14 protein.
          Length = 842

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +1

Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSLPDLERL 474
           LN   T  G RLL   V  PS ++ +I+ RQEA++ L    +L    +  L+   +L+R+
Sbjct: 243 LNHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAHELDRV 302

Query: 475 LA 480
           +A
Sbjct: 303 IA 304


>AF178755-1|AAD52669.1|  842|Caenorhabditis elegans HIM-14 protein
           protein.
          Length = 842

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +1

Query: 295 LNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSLPDLERL 474
           LN   T  G RLL   V  PS ++ +I+ RQEA++ L    +L    +  L+   +L+R+
Sbjct: 243 LNHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAHELDRV 302

Query: 475 LA 480
           +A
Sbjct: 303 IA 304


>AF125964-7|AAD14750.1|  350|Caenorhabditis elegans Hypothetical
           protein W03G1.2 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 340 WVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSLPDLERLLAKVHTLGNLKLQSS 519
           W        + +KE  EA+    D+ E+ +N K  L S+P  + +L ++  L  LK +  
Sbjct: 222 WAVKIEPTDDDMKETDEAITVSTDHLEMYRNKKLSLKSIPPTKLVLNELQPLVELKKRDE 281

Query: 520 I 522
           +
Sbjct: 282 V 282


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 685 PPSTCVILFNNTESTSLKLS-ARVSAEVKPFNTEM 584
           PP+T VILFN+ +   LK S   V AE    N E+
Sbjct: 74  PPNTAVILFNSVQVFHLKYSNLNVVAETMQGNVEV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,157
Number of Sequences: 27780
Number of extensions: 326610
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)