Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021172
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 424 CQNAKNVLTSLPDLERLLAKVHT 492
           C+    +LTSL  L R +  VHT
Sbjct: 5   CEPCNKILTSLTRLRRHIQNVHT 27


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 719 KFQSVPVIRIIATFDLCDS 663
           KF+SV + ++   FD CD+
Sbjct: 452 KFESVNIDKLYTYFDKCDT 470


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 719 KFQSVPVIRIIATFDLCDS 663
           KF+SV + ++   FD CD+
Sbjct: 452 KFESVNIDKLYTYFDKCDT 470


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 158 PDVLNRKLSERHKVDNCW 211
           P V N+K   +H + N W
Sbjct: 327 PKVKNKKAGSKHLLQNTW 344


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 653 HRVHITEALGKSQC 612
           H  H++ ALG+S C
Sbjct: 286 HHSHLSSALGRSAC 299


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -2

Query: 163 IGRSVRCELRHS*YLYVQ*ALSQVRNXSSESFNREFTVGSRCQTQGI 23
           + R++  E+ H+  L V      +   +  S  R   V   CQ QG+
Sbjct: 686 VARNLAAEVSHTQRLVVHVPPRWIVEPTDVSVERNKHVALHCQAQGV 732


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 439 NVLTSLPDLERLLAKVHTL 495
           N LTS+PD  R LA + TL
Sbjct: 441 NELTSVPDALRDLALLKTL 459


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 173 RKLSERHKVDNCWEGGNTLV 232
           R L +  K+DN W+ G+  +
Sbjct: 394 RNLVKGTKIDNWWDNGSNQI 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,260
Number of Sequences: 438
Number of extensions: 4233
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)