Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021172
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    64   1e-10
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    56   2e-08
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)...    52   4e-07
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    35   0.052
At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein con...    33   0.28 
At5g58350.1 68418.m07306 protein kinase family protein contains ...    30   1.5  
At1g05890.1 68414.m00617 zinc finger protein-related contains lo...    29   3.4  
At3g23100.1 68416.m02912 double strand break repair protein, put...    25   4.2  
At3g05580.1 68416.m00619 serine/threonine protein phosphatase, p...    29   4.5  

>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH6-1)
            (AGAA.3) identical to SP|O04716 DNA mismatch repair
            protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis thaliana}
          Length = 1324

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +1

Query: 277  GCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCL-FDNRELCQNAKNVLTS 453
            G LY +LN C TA GKRLL  W+  P  N  +IKERQ+AV  L  +N       +  L+ 
Sbjct: 719  GTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSR 778

Query: 454  LPDLERLLAKVHTLGNLKLQSSIRILEQYSTKRRHIQ 564
            LPD+ERL+A++ +      ++  +++    T ++ +Q
Sbjct: 779  LPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQ 815


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/70 (40%), Positives = 38/70 (54%)
 Frame = +1

Query: 277 GCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSL 456
           G LY  L+ C +  GKRLL  W+C P  ++  I +R + V+    N E  Q     L  L
Sbjct: 576 GTLYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKL 635

Query: 457 PDLERLLAKV 486
           PDLERLL ++
Sbjct: 636 PDLERLLGRI 645


>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
           identical to SP|O24617 DNA mismatch repair protein MSH2
           (AtMsh2) {Arabidopsis thaliana}
          Length = 937

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +1

Query: 304 CSTAMGKRLLYQWVCSPSANINVIKERQEAVKCLFDNRELCQNAKNVLTSLPDLERLL 477
           C+  MGKRLL+ W+  P  ++N IK R + V+C  +   L Q+ +  L  + D+ERLL
Sbjct: 327 CTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDVERLL 384


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 271 DEGCLYDRLNFCSTAMGKRLLYQWVCSPSANINVIKERQEAV 396
           + G L+  +N   T  G RLL  WV  P  + N+I  R +AV
Sbjct: 441 ESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAV 482


>At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           almost identical to beta-glucosidase GI:1732570 from
           [Arabidopsis thaliana]; similar to beta-glucosidase 1
           (GI:12043529) [Arabidopsis thaliana]
          Length = 524

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -3

Query: 255 ILSVIASSTK----VLPPSQQLSTLCLSDSFLFSTSGGAYDVNCDIPSIC 118
           +L+++AS       V PPS +LS     + FLF T+  AY V   I   C
Sbjct: 14  LLTIVASPANADGPVCPPSNKLSRASFPEGFLFGTATAAYQVEGAINETC 63


>At5g58350.1 68418.m07306 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 571

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 436 KNVLTSLPDLERLLAKVHTLGNLKLQSSIRILEQYSTKRRH 558
           K VL S  DL+RL ++VH L  L  +S IR    +     H
Sbjct: 53  KEVLRSSVDLQRLYSEVHLLSTLNHKSIIRFYTSWIDVHNH 93


>At1g05890.1 68414.m00617 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 552

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 41  PAPNCELAIKALGGXVSYLTECL 109
           PAP CE AI   GG  SY   CL
Sbjct: 222 PAPGCEHAIDFAGGTESYDVSCL 244


>At3g23100.1 68416.m02912 double strand break repair protein,
           putative  (XRCC4) identical to cDNA putative double
           strand break repair protein (XRCC4)  GI:9800642
          Length = 264

 Score = 25.4 bits (53), Expect(2) = 4.2
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +1

Query: 376 KERQEAVKCLFDNRELCQNAKNV--LTSLPDLERLLAKVHTLGNLK-LQSSIRILEQYST 546
           K R EA +CL    +LC         T    L  L AK   L  L+  + S+R++E+  +
Sbjct: 166 KMRSEAERCLAQGEKLCDEKTEFESATYAKFLSVLNAKKAKLRALRDKEDSVRVVEEEES 225

Query: 547 --KRRHIQSGR 573
             K    +SGR
Sbjct: 226 TDKAESFESGR 236



 Score = 21.8 bits (44), Expect(2) = 4.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 292 RLNFCSTAMGKRLLYQWVCSPS 357
           RL++     G +L ++W C PS
Sbjct: 111 RLSWTFEKEGTKLEWRWKCKPS 132


>At3g05580.1 68416.m00619 serine/threonine protein phosphatase,
           putative similar to serine/threonine protein phosphatase
           PP1 isozyme 8 SP:O82734 from [Arabidopsis thaliana]
          Length = 318

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 415 RELCQNAKNVLTSLPDLERLLAKVHTLGNL--KLQSSIRILE 534
           R+LC NA+ +  S P+L  L A +   G++  + Q  +R+ E
Sbjct: 38  RQLCVNARQIFLSQPNLLELHAPIRICGDIHGQYQDLLRLFE 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,120
Number of Sequences: 28952
Number of extensions: 302885
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)