Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021171
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.4  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   3.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   3.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 345 RCSYCNRRKWLTSGCLRKWIKPNSMECK 428
           RC YC  +K L  G  R+ ++      K
Sbjct: 137 RCQYCRYQKCLNMGMKREAVQEERQRTK 164


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -1

Query: 532 YKFIGI*RELGSGIRIASTISIFVSLFLSILRCKCLHSIEFGLIHLRRHPLV 377
           YK   + +++ S   +   +SI VSLF  + +   L+ +  G       P++
Sbjct: 238 YKLTSVMQKINSAFSVQLLVSIGVSLFDVLFQAYYLYYVATGKASFVTVPMI 289


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -1

Query: 532 YKFIGI*RELGSGIRIASTISIFVSLFLSILRCKCLHSIEFGLIHLRRHPLV 377
           YK   + +++ S   +   +SI VSLF  + +   L+ +  G       P++
Sbjct: 238 YKLTSVMQKINSAFSVQLLVSIGVSLFDVLFQAYYLYYVATGKASFVTVPMI 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,689
Number of Sequences: 336
Number of extensions: 3216
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)