Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021171
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    29   0.85 
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   6.0  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    26   6.0  

>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 539 WKSKFFITTSVRSLQRYFGKSRGADSICKLNKSNDPTSAFET 664
           W+  FF+T ++RS       +  + +ICK ++S+ P S  +T
Sbjct: 312 WQQAFFLTNTLRSAVVVIVGTAISYAICKHHRSDPPISIIKT 353


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 333 ISYERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 443
           +  +RC+ C    + + GC +     + +ECK LQ S
Sbjct: 57  VKTQRCAACKIIHYCSKGCQKADWPFHKLECKALQAS 93


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 570 SDPYKDISVNHEGLIQFANLIRAMTPHQHLKQGME 674
           +DP  D +  HE  ++F N+       Q  K GME
Sbjct: 247 NDPVYDTTERHELEVEFGNIADLRDRAQKAKDGME 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,866
Number of Sequences: 5004
Number of extensions: 52532
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)