Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021171
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    32   0.38 
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53...    31   1.2  
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45...    31   1.2  
08_01_0846 - 8294616-8294828,8294938-8295019,8295661-8295803           30   2.0  
07_01_0947 + 7982783-7983619,7983713-7983859,7983953-7984318           29   4.7  
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381...    28   8.2  
07_01_0165 + 1159821-1161362                                           28   8.2  

>06_03_0968 -
           26402154-26403834,26404322-26404383,26404473-26404682,
           26404776-26404860,26405461-26405618,26405745-26405868,
           26405955-26406123,26406202-26406287,26406379-26406467,
           26406564-26406735,26407820-26408193
          Length = 1069

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 333 ISYERCSYCNRRKWLTSGCLRK-WIKPNSMECKHLQRSIDKNK 458
           I+ ++CS C R ++ + GC  K W   +  +CK +++S   +K
Sbjct: 111 IATKKCSGCKRVRYCSQGCQSKHWQSGHKFKCKQMKKSSPADK 153


>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
            538601-538860,539950-540073,540978-541310,541447-541531,
            541683-541768,541843-541941,542041-542180,542717-543043,
            543163-543774,543887-543971,543972-544067,544147-544500,
            544536-544559,544597-544707,544811-544894,545468-545546,
            546122-546279,546412-546528,546622-546780,546857-546939,
            547525-547627,549184-549495
          Length = 1925

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 561  RPASDPYKDISVNHEGLIQFANLIRAMTPH 650
            +P  DPYK +S +  G IQF ++ RA  P+
Sbjct: 1031 QPGFDPYKIVSASQAGDIQFLDVRRASEPY 1060


>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
            459924-460183,461834-461918,462587-462919,463053-463137,
            463289-463374,463455-463556,463656-463795,464332-464658,
            464778-465389,465502-465586,465587-465682,465762-466115,
            466212-466322,466426-466509,467086-467164,467742-467899,
            468034-468150,468240-468398,468475-468557,469098-469200,
            470784-471080
          Length = 1899

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 561  RPASDPYKDISVNHEGLIQFANLIRAMTPH 650
            +P  DPYK +S +  G IQF ++ RA  P+
Sbjct: 1019 QPGFDPYKIVSASQAGDIQFLDVRRASEPY 1048


>08_01_0846 - 8294616-8294828,8294938-8295019,8295661-8295803
          Length = 145

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
 Frame = -1

Query: 571 DAGRYKKFTLPKFYKF--IGI*RELGSGIRIASTISIFVSLFLSILRCKCL--------- 425
           D GR ++ T+     F  +G   +  S I   +T  I++ +FLSIL C  L         
Sbjct: 34  DDGRSRRMTITTVACFFIVGASLKKPSAISFVNTFDIYIYMFLSILGCPRLTLDGLISNL 93

Query: 424 ----HSIEFGLIHLRRHPLVSHLRRLQYE 350
                +  FG+ HLR   L S LR+ QYE
Sbjct: 94  KSFNTNAVFGIKHLRVGTLFS-LRKEQYE 121


>07_01_0947 + 7982783-7983619,7983713-7983859,7983953-7984318
          Length = 449

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 174 CYLSVEYLYIPSFWSGCNHIFRRK 245
           C+ S+E LYI  F   CN+++R+K
Sbjct: 318 CFPSLEKLYIRKFSHKCNNVWRQK 341


>12_01_1073 +
           11135853-11137388,11137627-11137846,11137990-11138178,
           11138257-11138457,11138547-11139246,11163479-11164106
          Length = 1157

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 366 VGYNTNIVHNLCSSSTFNCHLCNINYSD 283
           +GY  + V  + SSS F CH CN N S+
Sbjct: 645 IGYTDDWVSKVNSSSNF-CHACNSNKSN 671


>07_01_0165 + 1159821-1161362
          Length = 513

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 384 GCLRKWIKPNSMECKHLQRSI-DKNKDTNIDIVDAILMP 497
           G   KW +PN + CKH  +S+         +++D  L P
Sbjct: 279 GIATKWFRPNPICCKHQDQSMCGSGSMDKAELLDVSLQP 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,602
Number of Sequences: 37544
Number of extensions: 277092
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)