SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021171
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    29   3.2  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    29   3.2  
AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear recep...    29   4.2  
AC006671-3|AAR30203.1|  235|Caenorhabditis elegans Nuclear hormo...    29   4.2  
AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormo...    29   4.2  
AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormo...    29   4.2  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   9.8  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   9.8  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   9.8  

>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 478 TIS-IFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRLQY 353
           TIS ++ ++F SI  C CLHS  F LI+ R    + +LR   Y
Sbjct: 6   TISRVYWTIFFSI--CLCLHSSMFLLIYYRTSRTIRNLRWFLY 46


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 478 TIS-IFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRLQY 353
           TIS ++ ++F SI  C CLHS  F LI+ R    + +LR   Y
Sbjct: 6   TISRVYWTIFFSI--CLCLHSSMFLLIYYRTSRTIRNLRWFLY 46


>AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear receptor
           NHR-88 protein.
          Length = 598

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 348 CSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNK---DTNIDIVDAILMPEPNSL*I 518
           C YC  ++ LT G   + I+P+  +    Q++  K K   DTN   +DA L P PN    
Sbjct: 93  CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPNGCDS 150

Query: 519 PIN 527
           P++
Sbjct: 151 PVS 153


>AC006671-3|AAR30203.1|  235|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform c protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 348 CSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNK---DTNIDIVDAILMPEPNSL*I 518
           C YC  ++ LT G   + I+P+  +    Q++  K K   DTN   +DA L P PN    
Sbjct: 88  CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPNGCDS 145

Query: 519 PIN 527
           P++
Sbjct: 146 PVS 148


>AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 348 CSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNK---DTNIDIVDAILMPEPNSL*I 518
           C YC  ++ LT G   + I+P+  +    Q++  K K   DTN   +DA L P PN    
Sbjct: 88  CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPNGCDS 145

Query: 519 PIN 527
           P++
Sbjct: 146 PVS 148


>AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform a protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 348 CSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNK---DTNIDIVDAILMPEPNSL*I 518
           C YC  ++ LT G   + I+P+  +    Q++  K K   DTN   +DA L P PN    
Sbjct: 88  CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPNGCDS 145

Query: 519 PIN 527
           P++
Sbjct: 146 PVS 148


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 342 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 443
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 662


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
           protein, isoforma protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 342 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 443
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 565


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
           protein, isoformb protein.
          Length = 2186

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 342 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 443
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,477
Number of Sequences: 27780
Number of extensions: 280010
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -