Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021171
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125952-5|AAD14697.2| 327|Caenorhabditis elegans Serpentine re... 29 3.2
AC006722-11|AAW88389.1| 327|Caenorhabditis elegans Serpentine r... 29 3.2
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 4.2
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 29 4.2
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 4.2
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 4.2
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 9.8
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 9.8
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 9.8
>AF125952-5|AAD14697.2| 327|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 61 protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 478 TIS-IFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRLQY 353
TIS ++ ++F SI C CLHS F LI+ R + +LR Y
Sbjct: 6 TISRVYWTIFFSI--CLCLHSSMFLLIYYRTSRTIRNLRWFLY 46
>AC006722-11|AAW88389.1| 327|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 75 protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 478 TIS-IFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRLQY 353
TIS ++ ++F SI C CLHS F LI+ R + +LR Y
Sbjct: 6 TISRVYWTIFFSI--CLCLHSSMFLLIYYRTSRTIRNLRWFLY 46
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 348 CSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNK---DTNIDIVDAILMPEPNSL*I 518
C YC ++ LT G + I+P+ + Q++ K K DTN +DA L P PN
Sbjct: 93 CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPNGCDS 150
Query: 519 PIN 527
P++
Sbjct: 151 PVS 153
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 348 CSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNK---DTNIDIVDAILMPEPNSL*I 518
C YC ++ LT G + I+P+ + Q++ K K DTN +DA L P PN
Sbjct: 88 CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPNGCDS 145
Query: 519 PIN 527
P++
Sbjct: 146 PVS 148
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 348 CSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNK---DTNIDIVDAILMPEPNSL*I 518
C YC ++ LT G + I+P+ + Q++ K K DTN +DA L P PN
Sbjct: 88 CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPNGCDS 145
Query: 519 PIN 527
P++
Sbjct: 146 PVS 148
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 348 CSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNK---DTNIDIVDAILMPEPNSL*I 518
C YC ++ LT G + I+P+ + Q++ K K DTN +DA L P PN
Sbjct: 88 CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPNGCDS 145
Query: 519 PIN 527
P++
Sbjct: 146 PVS 148
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 342 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 443
+RCS C +R W C +K S +C Q+S
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 662
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 342 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 443
+RCS C +R W C +K S +C Q+S
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 565
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 342 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 443
+RCS C +R W C +K S +C Q+S
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 576
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,477
Number of Sequences: 27780
Number of extensions: 280010
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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