Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021171
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.69 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.69 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 345 RCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS-IDKNKDTNIDI-VDAILMPE 500
           RC YC  +K L  G  R+ ++      K   +S ++     + D+ ++ IL  E
Sbjct: 161 RCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAE 214


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 345 RCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS-IDKNKDTNIDI-VDAILMPE 500
           RC YC  +K L  G  R+ ++      K   +S ++     + D+ ++ IL  E
Sbjct: 161 RCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAE 214


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = +3

Query: 345 RCSYCNR---RKWLTSGCLRKWIKPNSMECKHLQRS 443
           +C  C +   R WL  G +R         C+H  R+
Sbjct: 44  KCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRA 79


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 327 MNISYERCSYCNRRKWLTSGCLRKWIK 407
           + I+  RC YC  +K +  G  R  ++
Sbjct: 113 LRINRNRCQYCRLKKCIAVGMSRDAVR 139


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 327 MNISYERCSYCNRRKWLTSGCLR 395
           + I+  RC YC  +K +  G  R
Sbjct: 64  LRINRNRCQYCRLKKCIAVGMSR 86


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -3

Query: 50  LSVCLLKLYFLECP 9
           +S+  +K+Y++ CP
Sbjct: 179 ISILAIKVYYISCP 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,479
Number of Sequences: 438
Number of extensions: 3526
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)