Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021171
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05140.1 68416.m00558 protein kinase family protein contains ...    29   2.2  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    27   9.0  

>At3g05140.1 68416.m00558 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 460

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +2

Query: 509 SLNTNKFVKLWKSKFFITTSVRSLQRYFGKSRGADSICKLNKSNDP 646
           S N  KF KLWK +     S++ L  +   S  A  I K NKS DP
Sbjct: 71  SSNWGKFFKLWKRR-----SMKRLSSFPPLSGAAPPIIKQNKSADP 111


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 454 FLSILRCKC-LHSIEFGLIHLRRHPLVSHLRRLQYEHR 344
           F   + CK  LH +   L   +R+ L SHL RLQY  R
Sbjct: 298 FFKCVECKFFLHKVCASLPRKKRNILHSHLLRLQYGDR 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,235
Number of Sequences: 28952
Number of extensions: 249728
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)