Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021170
(802 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 159 1e-37
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 87 4e-16
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 87 5e-16
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 85 2e-15
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 85 2e-15
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 85 3e-15
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 82 1e-14
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 82 1e-14
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 77 5e-13
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 77 7e-13
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 76 1e-12
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 74 4e-12
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 72 2e-11
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 70 6e-11
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 68 2e-10
UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physali... 66 1e-09
UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep: Rep... 40 0.055
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 38 0.39
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 34 3.6
UniRef50_A4E4Z5 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_A4RF10 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 33 8.4
UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4; ... 33 8.4
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 159 bits (385), Expect = 1e-37
Identities = 74/83 (89%), Positives = 74/83 (89%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI
Sbjct: 1557 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 1616
Query: 580 RAPRXXXXXXXXXLDDRTLPDKI 512
RAPR LDDRTLPDKI
Sbjct: 1617 RAPRALLAKLVLALDDRTLPDKI 1639
Score = 155 bits (377), Expect = 9e-37
Identities = 70/72 (97%), Positives = 72/72 (100%)
Frame = -3
Query: 512 SAYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQT 333
++YLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQT
Sbjct: 1640 ASYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQT 1699
Query: 332 MLSLGFSWLSRP 297
MLSLGFSWLSRP
Sbjct: 1700 MLSLGFSWLSRP 1711
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = -2
Query: 258 ITRTRFAPLFSDPSVEGVLQLDF 190
+ RTRFAPLFSDPSVEGVLQLDF
Sbjct: 1725 LARTRFAPLFSDPSVEGVLQLDF 1747
Score = 33.5 bits (73), Expect = 6.3
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2
Query: 801 YDDNTDYNIAVIYA 760
YDDNTDYNIAVIY+
Sbjct: 1543 YDDNTDYNIAVIYS 1556
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 87.4 bits (207), Expect = 4e-16
Identities = 38/63 (60%), Positives = 48/63 (76%)
Frame = -3
Query: 512 SAYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQT 333
++YLSEF +GHSLG FW LLP DQV YQSA++DFFCR S+EQK L IGEVP+ + +
Sbjct: 1666 ASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYDFFCRHASREQKQILNIGEVPDTVLSS 1725
Query: 332 MLS 324
+ S
Sbjct: 1726 IAS 1728
Score = 76.2 bits (179), Expect = 9e-13
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
+Y + + VSGDDS++ P +W A+ LL+L FK E ++ LFCGYY+GPAGAI
Sbjct: 1583 KYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPAGAI 1642
Query: 580 RAPRXXXXXXXXXLDDRTLPDKI 512
R+P +DD ++ DK+
Sbjct: 1643 RSPITLFAKIMSAVDDLSIDDKL 1665
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 87.0 bits (206), Expect = 5e-16
Identities = 39/80 (48%), Positives = 48/80 (60%)
Frame = -1
Query: 754 DITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRA 575
D V +SGDD +SPPPP P W + +LSL FK E R GLFCGYYLGPAGA+R+
Sbjct: 154 DPEVHAVLISGDDLDISPPPPVRPTWPILEAMLSLRFKTEVSRYGLFCGYYLGPAGAVRS 213
Query: 574 PRXXXXXXXXXLDDRTLPDK 515
P +DD ++ DK
Sbjct: 214 PLALFAKLIIAVDDGSIEDK 233
Score = 78.6 bits (185), Expect = 2e-13
Identities = 35/53 (66%), Positives = 40/53 (75%)
Frame = -3
Query: 518 QNSAYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIG 360
+ ++YLSEF VGHSLG WTLLP +QV YQSA FDFFCR C KLAL+IG
Sbjct: 233 KKASYLSEFAVGHSLGQDMWTLLPENQVPYQSANFDFFCRNCPPSWKLALRIG 285
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 85.0 bits (201), Expect = 2e-15
Identities = 38/69 (55%), Positives = 45/69 (65%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQTM 330
AYL+EF VGHS GDAFWT+LP + V YQSA FDFFCR + K+ L++GE PE L
Sbjct: 1670 AYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLA 1729
Query: 329 LSLGFSWLS 303
G W S
Sbjct: 1730 FE-GLKWAS 1737
Score = 82.2 bits (194), Expect = 1e-14
Identities = 38/86 (44%), Positives = 53/86 (61%)
Frame = -1
Query: 769 HLREYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPA 590
HL EY + + + VSGDDSL+ PP W A++P+L+LTFKKE R FCGYY+G
Sbjct: 1584 HL-EYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKERGRYATFCGYYVGFT 1642
Query: 589 GAIRAPRXXXXXXXXXLDDRTLPDKI 512
GA+R+P +DD ++ DK+
Sbjct: 1643 GAVRSPPALFAKLMIAVDDGSISDKL 1668
Score = 33.1 bits (72), Expect = 8.4
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 3/26 (11%)
Frame = -2
Query: 801 YDDNTDYNIAVI---YASTTSPLKLS 733
YDDNTDYNIAV+ YA ++PL +S
Sbjct: 1572 YDDNTDYNIAVLHLEYAVGSTPLMVS 1597
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 85.0 bits (201), Expect = 2e-15
Identities = 40/70 (57%), Positives = 49/70 (70%)
Frame = -3
Query: 512 SAYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQT 333
+AYL EF VGHSLGD+ W+ LP V +QSA FDFFCR ++ KLAL +GEVPE + Q
Sbjct: 1710 AAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLALHLGEVPETIIQR 1769
Query: 332 MLSLGFSWLS 303
+ L SWLS
Sbjct: 1770 LSHL--SWLS 1777
Score = 71.3 bits (167), Expect = 3e-11
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
EY VSGDDSL+ PP P+W A+ PLL+L FKKE FCGYY G +
Sbjct: 1627 EYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCV 1686
Query: 580 RAPRXXXXXXXXXLDDRTLPDKI 512
R+P +DD ++ DK+
Sbjct: 1687 RSPIALFAKLAIAVDDSSISDKL 1709
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 84.6 bits (200), Expect = 3e-15
Identities = 41/83 (49%), Positives = 53/83 (63%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
+Y + V VSGDDSLV PP +P W A++PL +L K E GLFCGY++GPAGA+
Sbjct: 1761 QYLLHRTPVLVSGDDSLVDRVPPMNPSWPALAPLFALKPKPETSPFGLFCGYFVGPAGAV 1820
Query: 580 RAPRXXXXXXXXXLDDRTLPDKI 512
RAPR L+D +LP+KI
Sbjct: 1821 RAPRALFAKLAIALEDGSLPEKI 1843
Score = 75.8 bits (178), Expect = 1e-12
Identities = 35/72 (48%), Positives = 50/72 (69%)
Frame = -3
Query: 512 SAYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQT 333
++Y++EF VG SLGD+ W+L+P + VIYQSA FD CR S + KLAL++GEVP+
Sbjct: 1844 ASYVAEFSVGQSLGDSLWSLIPPELVIYQSACFDLICRHASPQLKLALRLGEVPD-WGSL 1902
Query: 332 MLSLGFSWLSRP 297
+ L +L+RP
Sbjct: 1903 LSQLKLRFLTRP 1914
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 82.2 bits (194), Expect = 1e-14
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = -3
Query: 176 MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDM 57
MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDM
Sbjct: 1 MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDM 40
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 82.2 bits (194), Expect = 1e-14
Identities = 41/86 (47%), Positives = 52/86 (60%)
Frame = -1
Query: 769 HLREYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPA 590
HL EY + + VSGDDSL+ PP +P W AV PLL+L FKKE R G FCGYY+G
Sbjct: 1657 HL-EYLVGSTPCMVSGDDSLLGREPPRNPIWQAVKPLLALRFKKERTRYGEFCGYYVGCE 1715
Query: 589 GAIRAPRXXXXXXXXXLDDRTLPDKI 512
G IR+P +DD T+ +K+
Sbjct: 1716 GCIRSPMALFAKLMVCVDDGTIEEKM 1741
Score = 78.6 bits (185), Expect = 2e-13
Identities = 36/69 (52%), Positives = 47/69 (68%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQTM 330
+Y +EF +GHSLGDAFW LLP D V +QSA+FDFFCR ++ K+ K+G V L +
Sbjct: 1743 SYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHL 1802
Query: 329 LSLGFSWLS 303
LS +WLS
Sbjct: 1803 LS-KLTWLS 1810
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 77.0 bits (181), Expect = 5e-13
Identities = 33/71 (46%), Positives = 50/71 (70%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQTM 330
+YL+EF +GH LGD+ W LLP+D V+YQSA FD+FCR+ ++ QK+ L+ G V +
Sbjct: 1637 SYLTEFSIGHGLGDSLWQLLPSDLVLYQSACFDYFCRKATRSQKILLQPGLVDQETLD-K 1695
Query: 329 LSLGFSWLSRP 297
++L ++SRP
Sbjct: 1696 IALSAKFISRP 1706
Score = 64.1 bits (149), Expect = 4e-09
Identities = 33/83 (39%), Positives = 41/83 (49%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
+YD+ VSGDDS +S +W V LL L K + +GLFCGYYLGP G I
Sbjct: 1553 QYDLRKTPTLVSGDDSYLSGTLSPRSNWPFVKELLHLRLKPSSLIDGLFCGYYLGPQGCI 1612
Query: 580 RAPRXXXXXXXXXLDDRTLPDKI 512
R P DD + DK+
Sbjct: 1613 RNPLALFAKLMIAEDDGSAFDKL 1635
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 76.6 bits (180), Expect = 7e-13
Identities = 36/82 (43%), Positives = 46/82 (56%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
+YD+ + + VSGDDSL+ P P DW +V L L FK E + LFCGYY+GPAG I
Sbjct: 1651 QYDVGSCPIMVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHPLFCGYYVGPAGCI 1710
Query: 580 RAPRXXXXXXXXXLDDRTLPDK 515
R P +DD L D+
Sbjct: 1711 RNPLALFCKLMIAVDDDALDDR 1732
Score = 64.9 bits (151), Expect = 2e-09
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLAL 369
+YL+EF GH LG++ W LLP V YQSA FDFFCR C + +K+ L
Sbjct: 1735 SYLTEFTTGHLLGESLWHLLPETHVQYQSACFDFFCRRCPRHEKMLL 1781
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 75.8 bits (178), Expect = 1e-12
Identities = 34/70 (48%), Positives = 44/70 (62%)
Frame = -3
Query: 512 SAYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQT 333
++YLSEF +GHSLGD W LP + V +QSA FDFFCR + KL+L +GEVPE +
Sbjct: 1848 ASYLSEFALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPRHLKLSLMLGEVPESII-A 1906
Query: 332 MLSLGFSWLS 303
+ W S
Sbjct: 1907 RIGSSLKWAS 1916
Score = 73.7 bits (173), Expect = 5e-12
Identities = 35/83 (42%), Positives = 44/83 (53%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
EY VSGDDSL+ PP P+W + PLLSL FKKE R FCGYY G +
Sbjct: 1765 EYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHVGCV 1824
Query: 580 RAPRXXXXXXXXXLDDRTLPDKI 512
R+P +DD ++ DK+
Sbjct: 1825 RSPVALFAKLAIAVDDGSISDKM 1847
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 74.1 bits (174), Expect = 4e-12
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
+Y + + VSGDDS+V+ PP +P W+A+ LL L FK LFCGYY+ P GA+
Sbjct: 1549 QYSMGSTPCLVSGDDSVVAGQPPVNPAWNAIKNLLHLKFKTHCSAYPLFCGYYVSPVGAV 1608
Query: 580 RAPRXXXXXXXXXLDDRTLPDK 515
R P DD ++P+K
Sbjct: 1609 RNPHALFAKLMIAHDDGSIPEK 1630
Score = 69.3 bits (162), Expect = 1e-10
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPE-HLCQT 333
+YLSEF VGHS+G FW+ +P YQ+A+++FFCR CS+ +KL L + + E HL
Sbjct: 1633 SYLSEFSVGHSIGHEFWSAIPDSIHCYQAAVYNFFCRHCSRSEKLLLTLDSIDESHL--E 1690
Query: 332 MLSLGFSWLSR 300
LS W+S+
Sbjct: 1691 KLSYKVKWVSK 1701
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 71.7 bits (168), Expect = 2e-11
Identities = 35/82 (42%), Positives = 44/82 (53%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
++D+ V VSGDDSL+ PP W+A LL L FK E + LFCGYY G AGAI
Sbjct: 1680 QFDMKDIPVMVSGDDSLIDRQPPLAQSWEATKRLLHLRFKTEKTTHPLFCGYYTGSAGAI 1739
Query: 580 RAPRXXXXXXXXXLDDRTLPDK 515
R P +DD + D+
Sbjct: 1740 RNPLALFSKLMIAIDDEAIHDR 1761
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/70 (47%), Positives = 43/70 (61%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQTM 330
+YL+EF GH LGDA WTLLP IYQSA FD+FCR +K L E+P+ + +
Sbjct: 1764 SYLTEFSTGHQLGDALWTLLPESTQIYQSACFDYFCRHSPPHEKALLSSFELPDSVI-SK 1822
Query: 329 LSLGFSWLSR 300
+S WLS+
Sbjct: 1823 ISSSTKWLSK 1832
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 70.1 bits (164), Expect = 6e-11
Identities = 31/63 (49%), Positives = 39/63 (61%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
+Y I+ + VSGDDS++ PP +P+W AV LL L FK E LFCGYY+GP G
Sbjct: 1576 QYVISDHPIMVSGDDSVICGHPPINPNWPAVEKLLHLRFKTEETSLPLFCGYYVGPTGCC 1635
Query: 580 RAP 572
R P
Sbjct: 1636 RNP 1638
Score = 56.0 bits (129), Expect = 1e-06
Identities = 27/70 (38%), Positives = 37/70 (52%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQTM 330
+YL EF +GH LGD L P + Y SA +D FCR+C+ QKL L +P +
Sbjct: 1660 SYLYEFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRKCTASQKLILSFEPIPPSFFSKL 1719
Query: 329 LSLGFSWLSR 300
S W+S+
Sbjct: 1720 ASTS-RWVSK 1728
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 68.1 bits (159), Expect = 2e-10
Identities = 31/82 (37%), Positives = 44/82 (53%)
Frame = -1
Query: 760 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
+Y + + +SGDDS++ PP P W + +L L FK E + LFCGYY+ P GA
Sbjct: 1646 QYSLNGHPILISGDDSVLCGTPPPSPLWPTLKKMLHLRFKIERTSHPLFCGYYVSPHGAA 1705
Query: 580 RAPRXXXXXXXXXLDDRTLPDK 515
R P +DD++L DK
Sbjct: 1706 RNPYALFAKLMICVDDKSLHDK 1727
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/70 (41%), Positives = 41/70 (58%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQTM 330
+YLSEF GH GD ++LP+ + YQSA+ DFFCR C+ +K+ L + +PE
Sbjct: 1730 SYLSEFSTGHLAGDLVTSILPSHLLPYQSAVHDFFCRNCTPAEKILLSLDPIPESKI-LQ 1788
Query: 329 LSLGFSWLSR 300
L L W S+
Sbjct: 1789 LILKVRWASQ 1798
>UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physalis
mottle virus|Rep: RNA replicase polyprotein - Physalis
mottle virus (PhMV) (Belladonna mottle virus-Iowa)
Length = 178
Score = 66.1 bits (154), Expect = 1e-09
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = -1
Query: 697 PPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXLDDRTLPD 518
PP P+W A+ LL L FK E + LFCGYYL PAG IR P +DD +LP+
Sbjct: 6 PPISPNWPAIKDLLHLKFKTEITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDDMSLPE 65
Query: 517 KI 512
K+
Sbjct: 66 KV 67
Score = 62.1 bits (144), Expect = 2e-08
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -3
Query: 509 AYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPE 348
+YLSE +GH+LGD LP + YQSA FDFFCR C+ QKL L +PE
Sbjct: 69 SYLSEVSIGHNLGDQIIQHLPPHLIQYQSACFDFFCRNCTPSQKLLLSNDPIPE 122
>UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep:
Replicase - Potato virus T
Length = 248
Score = 40.3 bits (90), Expect = 0.055
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 757 YDITTQTVFV-SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 581
Y+IT TV +GDD S D + + L+L K +F +FCG+Y+ G +
Sbjct: 84 YNITRDTVIAFAGDDMYASGKLEIRKDREDLLAHLTLKAKVQFTEKPMFCGWYIKKMGIV 143
Query: 580 RAPR 569
+ PR
Sbjct: 144 KEPR 147
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 37.5 bits (83), Expect = 0.39
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -1
Query: 760 EYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGA 584
+YD+ T + +GDD + P + ++ ++ SL K +F R+ FCG+ L G
Sbjct: 1496 KYDVRKTHAICFAGDDMCANVRLPENHEYSSLLKKFSLKAKVDFTRSPTFCGWNLSRYGI 1555
Query: 583 IRAP 572
++ P
Sbjct: 1556 VKKP 1559
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 34.3 bits (75), Expect = 3.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -1
Query: 727 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAP 572
SGDD + P P W ++S SL K FCG+ L G IR P
Sbjct: 1414 SGDDMFILCVPTISPGWLSISRYFSLVGKPVITFLPEFCGWLLTSHGIIRHP 1465
>UniRef50_A4E4Z5 Cluster: Putative uncharacterized protein; n=1;
Listeria monocytogenes HPB2262|Rep: Putative
uncharacterized protein - Listeria monocytogenes HPB2262
Length = 225
Score = 33.5 bits (73), Expect = 6.3
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -3
Query: 209 VFCNWISDDLFMEEIVPLVVSAASAIPSLVNAFSSSKP 96
++C+++++D F+EEI+P + A S I ++ F S P
Sbjct: 57 IYCDYVNNDRFLEEIIPYI--ATSKIDGVIPGFEYSVP 92
>UniRef50_A4RF10 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 548
Score = 33.5 bits (73), Expect = 6.3
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 766 LREYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 626
L ++T+T+ D+S V P A P WDA+S L S +++FV+
Sbjct: 246 LEPASLSTETLVAQADNSFVFVAPQAAPTWDAISELES---EEDFVK 289
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 33.1 bits (72), Expect = 8.4
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = -1
Query: 727 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN------GLFCGYYLGPAGAIRAP 572
+GDDS + P P + +SP LSL K + +R+ FCG+ + P G I+ P
Sbjct: 1528 AGDDSACAAPLSEKPSFQHISPELSLKSKAK-IRSQTKGDYATFCGWLITPKGFIKNP 1584
>UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 824
Score = 33.1 bits (72), Expect = 8.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -1
Query: 721 DDSLVSPPPPAHPDWDAVSPLLSLTFK 641
D S++ PPPPA P +++P+++ TF+
Sbjct: 514 DASMMPPPPPAQPKGPSLNPIITTTFR 540
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,270,100
Number of Sequences: 1657284
Number of extensions: 16682172
Number of successful extensions: 46140
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 44086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46093
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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