Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021170
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    25   0.53 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.93 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.2  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   6.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.7  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 212 RVFCNWISDDLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSA 72
           R +  W S  +FM  +V L+ +  S    +  +  SS  P++   SA
Sbjct: 201 RAYVTWYSISVFMVPLVVLIFTYTSICIEIWQSSESSLRPRSSQKSA 247


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 312 GETEGKHCLTKMFGHFSYFEGEFLFLGTFTAKEIKKRALVNHLIC 446
           GE++G  C   +  +     G+F++L TF   EI  +  V   +C
Sbjct: 308 GESKGSSCYRLLSRN-----GQFIYLRTFGFLEIDDQGTVESFVC 347


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 149 SAASAIPSLVNAFSSSKPPQTDNPSAR 69
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 349 NIFVRQCFPSVSPGYHAP 296
           NI  R+  P+V PGY  P
Sbjct: 23  NIRDRRVLPTVEPGYLRP 40


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 650 ERKEWRNGVPIGVSRRW 700
           + ++WRN  P   + RW
Sbjct: 360 DEQQWRNNQPSTSNNRW 376


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 769 HLREYDITTQTVFVS 725
           HL +YD+TT  + +S
Sbjct: 272 HLYDYDLTTHVMLLS 286


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 769 HLREYDITTQTVFVS 725
           HL +YD+TT  + +S
Sbjct: 272 HLYDYDLTTHVMLLS 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,672
Number of Sequences: 336
Number of extensions: 3919
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)