Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021170
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.3  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   3.1  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   4.1  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   5.4  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   5.4  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   5.4  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   7.2  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   7.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.5  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 375 RPQNRRSARTSLSDNAFPRFLLVITPP 295
           RPQ +RS+   LS +AF +F+   +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 413 DFF-CRECSKEQKLALKIGEVPEHLCQTMLSLGFSW 309
           DFF  RE   +++L L    VP HL Q+ L    SW
Sbjct: 834 DFFGLRELGLDRELGLDSLSVPLHLLQSRLRSNMSW 869


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 330 HCLTKMFGH--FSYFEGEFLFLGTFTAKEIKKRAL 428
           + L    GH   S+  GE  F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 185 DLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTD 84
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 448 GKRVQKASPREWPTTNSLR*ALFCQEG 528
           GK      P+ WP T+ L    +CQEG
Sbjct: 323 GKFALATLPQTWPNTSCLDLLNYCQEG 349


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -1

Query: 286 FWIGPPAYVYYSHSFRPPXFRSFCRGCFATGFLMTYS--WKKLCL*SFLPLRPFRPWSML 113
           F + P  Y + +H F+       C G F  G++ T++  W   C       R  R W++L
Sbjct: 209 FLLKPAYYRFLNHKFKHNLNPLTCTGRFIIGYVSTFAAYWLGFCGIFLDYSRRKRVWTLL 268


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 101 WKKRKH*PRTEWPKRQKRLKAQFLP*IGHQKSSCKTPSTEGSEXRGA 241
           WKK +   + EW K ++  KA++       K+  K    E  E R +
Sbjct: 143 WKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKEWRNS 189


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 386 PWNIHGKRNQKARSGKSLDLLARESRKRRRE 478
           PW +  K   K R GK+++ L    R R +E
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKE 316


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 455 LLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQTMLSLGF 315
           L  +D VIY    F F C +       +LK+ +  E+ C+ +L   F
Sbjct: 76  LTKSDAVIYLEDQFHFHCYDYYYTPIPSLKLKDSEENTCEMILHSSF 122


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 212 STEGSEXRGAKRVRVINVGGRSYPEEHRGGVITRRNRGKALSDK 343
           ST     RGA+   ++   GRS+  E     I R+ + K+  DK
Sbjct: 353 STNPRYDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDK 396


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 730 VSGDDSLVSPPPPAHPDWDAVSPLLSL 650
           VS  +S+VSPPP   P   A +P  SL
Sbjct: 158 VSAPNSMVSPPPSFQPP-SAAAPATSL 183


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
 Frame = -3

Query: 209  VFCNWISDDLFMEE-----------IVPLVVSAASAIPSLVNA-FSSSKPPQTDNPSARS 66
            V+C+  SD L  EE            +P     A A  S  NA FSSS PPQ  N S  S
Sbjct: 1573 VYCSRCSDSLLGEESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
 Frame = -3

Query: 209  VFCNWISDDLFMEE-----------IVPLVVSAASAIPSLVNA-FSSSKPPQTDNPSARS 66
            V+C+  SD L  EE            +P     A A  S  NA FSSS PPQ  N S  S
Sbjct: 1573 VYCSRCSDSLLGEESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,184
Number of Sequences: 5004
Number of extensions: 67353
Number of successful extensions: 191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)