Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021170
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0373 + 2783596-2784933                                           32   0.46 
06_01_0087 + 695443-695655,696669-696983                               29   3.3  
09_02_0439 + 9406451-9407178,9407225-9407603,9407887-9408038,940...    29   4.3  
12_02_1024 - 25449163-25449824,25451882-25452191                       28   7.5  
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    28   7.5  
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196...    28   7.5  
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928...    28   9.9  
01_05_0397 + 21753095-21753814                                         28   9.9  

>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +1

Query: 103 EEEKALTKDGMAEAAETTKGTISSMNRS 186
           E+++ LTK G +  +ET+KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>06_01_0087 + 695443-695655,696669-696983
          Length = 175

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -1

Query: 721 DDSLVSPPPPAH---PDWDAVSPL 659
           DD L  PPPPA     DW+A +PL
Sbjct: 26  DDELPPPPPPASGSGEDWEATTPL 49


>09_02_0439 +
           9406451-9407178,9407225-9407603,9407887-9408038,
           9408432-9408504,9409255-9409275
          Length = 450

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 46  GKGCISMERADGLSV*GGLEEEKALTKDGMAEAAETTKGTISSMNRSSEIQLQNTLYRR 222
           G+G +    A G+   GG+ +  AL   G+   A TT+    S   S+EI   N +YR+
Sbjct: 388 GRGVVGAGGAGGVG--GGVLDGSALGAGGVCMVASTTRYKSFSPVGSNEIDGSNCMYRQ 444


>12_02_1024 - 25449163-25449824,25451882-25452191
          Length = 323

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 763 REYDITTQTVF--VSGDDSLVSPPPPAHP 683
           R Y +  +T F   +G+D L  PPPPA P
Sbjct: 204 RLYGLNAKTNFPAAAGEDDLPPPPPPAKP 232


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 670 RRPNRGEQEVEVILKNHHLRQRQFEW*CRTRVNDGNIVIR 789
           RR N+GE ++E   +   L  RQ +W C     D   V R
Sbjct: 259 RRANKGEDKIEEAHRLRLLDNRQLQWRCLNAHADAAAVAR 298


>09_02_0602 -
           11118788-11119178,11119262-11119451,11119590-11119658,
           11119890-11120016,11120134-11120399,11120760-11120872,
           11121693-11121764,11121860-11121998,11124277-11124360,
           11125278-11125771,11127604-11128187
          Length = 842

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 200 NWISDDLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMD 60
           +WIS +   +  + L  + +S +P +VNAF        DNPS    D
Sbjct: 313 DWISAETSGKYNITLAATDSSQLPPIVNAFEVYGRIPLDNPSTFPTD 359


>10_08_0666 -
           19691985-19692216,19692327-19692404,19692508-19692837,
           19692913-19693158,19693224-19693483,19694469-19695023
          Length = 566

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 371 GRVFVPWNIHGKRNQKARSGKSL 439
           GR  VPW++HGK    +R+ +++
Sbjct: 253 GRCLVPWHLHGKHFPSSRTRRAV 275


>01_05_0397 + 21753095-21753814
          Length = 239

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 763 REYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSL 650
           + YD  T+ V V+  D      PP  PD DA SPL  L
Sbjct: 137 KHYDQVTKQVVVAAADRCFLRTPPRRPDVDA-SPLRRL 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,455,305
Number of Sequences: 37544
Number of extensions: 509489
Number of successful extensions: 1681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)